Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0396 ATGACTTTTTCTATTATCTTTTTATTTGGCTCTAATAAATTTGTCTTTGTGTGTGTATATATAGTTAACAAGAGGAGGCTCAGTTTTCTTCAGAGAGTTCACAGAAGCTCATCAACAAACATGGCGACCCAAATGAGCAAAAAGCGAAAGTTTGTAGCCGATGGAGTTTTCTTTGCGGAGCTGAATGAGGTTTTGACTAGGGAGCTTGCAGAAGATGGGTACTCTGGTGTTGAAGTTAGGGTTACCCCCATGAGGACTGAGATCATCATCAGGGCCACCCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGAAGGATTAGGGAACTGACTTCTATTGTTCAGAAGCGTTTCAAGTTCCCTGAGAACAGTGTTGAACTGTATGCTGAGAAAGTTAACAACAGAGGGCTTTGTGCCATTGCACAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGTCTTGCTGTCAGAAGGGCTTGTTATGGTGTCCTTAGGTTTGTCATGGAAAGTGGTGCCAAAGGTTGTGAGGTTATTGTTAGTGGCAAGCTCAGGGCTCAGCGTGCCAAATCAATGAAATTCAAAGATGGATACATGATATCATCTGGTCAGCCCGTTAAAGAATATATAGACTCTGCCGTGAGGCACGTGCTTTTGAGACAGGGTGTTCTTGGTATCAAGGTGAAAATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGACCAACTAAACCTATTCCTGATGTGGTCACAATCCATCCACCAAAGGAGGAAGAAGATTACATTGTCAGGCCCTTGCAACCACCCGCGGTTCCCACCAACATAGAGATTCCAGCTGTCTAG 837 0.4492 MTFSIIFLFGSNKFVFVCVYIVNKRRLSFLQRVHRSSSTNMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPIPDVVTIHPPKEEEDYIVRPLQPPAVPTNIEIPAV 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0396 278 TIGRFAM uS3_euk_arch: ribosomal protein uS3 48 249 IPR005703 GO:0003735|GO:0006412|GO:0015935
Mibi04g0396 278 ProSiteProfiles Type-2 KH domain profile. 61 132 IPR004044 GO:0003723
Mibi04g0396 278 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 50 139 IPR009019 GO:0003723
Mibi04g0396 278 Pfam KH domain 60 133 IPR004044 GO:0003723
Mibi04g0396 278 CDD 40S_S3_KH 55 135 - -
Mibi04g0396 278 Pfam Ribosomal protein S3, C-terminal domain 146 228 IPR001351 GO:0003735|GO:0006412
Mibi04g0396 278 Gene3D - 133 259 IPR036419 -
Mibi04g0396 278 ProSitePatterns Ribosomal protein S3 signature. 187 223 IPR018280 -
Mibi04g0396 278 SUPERFAMILY Ribosomal protein S3 C-terminal domain 133 231 IPR036419 -
Mibi04g0396 278 FunFam 40S ribosomal protein S3 41 132 - -
Mibi04g0396 278 FunFam 40S ribosomal protein S3 133 266 - -
Mibi04g0396 278 Gene3D - 37 131 IPR015946 -
Mibi04g0396 278 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 46 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0396 Mibi-ChrMibi04 6853593 6856324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0396 41 278 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.553 8.53e-151 419