Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0361 ATGCAGAATCCAAGACTGAAACAGCATCAGCAGCAGCAGCAACAAGCTTTGATGCAGCAAGCACTTATGCAGCAACAGTCTCTTTACCACCCTGGCCTCTTAGCTCATCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTTCTTGCCGCAGTGTGTATGTGGGGAATATTCATCCACAGATAACCGAGGCCATGCTTCAGGAACTTTTTGCATGTAATGGCCCGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCACTATTTTGATCGTAGATCAGCTGCTCTTTCCATAGCATCTCTTAATGGAAAGCCTCTGTTTGGTCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGGCAGAGGGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACATTGTTTGCCTGCTTTTCTGTTTACCCAAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACGGGACGATCTAGAGGGTTTGGTTTTGTTTCATTCCGTAATCAACAGGATGCACAAGGCGCTATTAATGATTTGACTGGCAAGTGGCTTGGTAGTAGACAGATACGCTGTAACTGGGCAACAAAAGGCGCTGGTTCTAGTGAGGACAAACAAGGTTCAGACACTAAAAGTGTGGTTGAACTAACTAATGGCTCATCTGAGGATGGCAAGGAGACGAGTAACAGTGATGCCCCAGAGAACAATCCACAGTATACCACTGTTTATGTAGGAAATCTTGCTCCAGAGGTAACCCAGCTTGATCTCCATCGCCACTTCCATAATCTTGGGGCTGGTGCAATAGAGGAGGTTCGAGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGATACAATACTCATGCAGAAGCAGCAATGGCTATTCAGATGGGGAATACCCAGCCTTTTCTCTTGGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCGGCATCGCTGCCGGGTTTCTCAGCATCGGATCTTCTGGCCTATGAGCGTCAGCTAGCGATGAGCAAGATGGGTGGGGTCCATGCCCTGATGCATCCCCAAGGGCAGCATCCTCTTAAGCAGGCAGCACTTGGAGGAAGTCAGGCGATGTATGATGGTGGGTTCCAGAATGTTGCTGCACAACAAATGATGTACTACCATTGA 1263 0.4711 MQNPRLKQHQQQQQQALMQQALMQQQSLYHPGLLAHPQIEPIPSGNLPPGFDPSSCRSVYVGNIHPQITEAMLQELFACNGPVEGCKLIRKEKSSYGFIHYFDRRSAALSIASLNGKPLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQGAINDLTGKWLGSRQIRCNWATKGAGSSEDKQGSDTKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYNTHAEAAMAIQMGNTQPFLLGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGFSASDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAALGGSQAMYDGGFQNVAAQQMMYYH 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0361 420 SUPERFAMILY RNA-binding domain, RBD 253 346 IPR035979 GO:0003676
Mibi04g0361 420 Gene3D - 240 342 IPR012677 -
Mibi04g0361 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
Mibi04g0361 420 FunFam Oligouridylate-binding protein 1C 240 342 - -
Mibi04g0361 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 45 341 - -
Mibi04g0361 420 SUPERFAMILY RNA-binding domain, RBD 136 228 IPR035979 GO:0003676
Mibi04g0361 420 FunFam oligouridylate-binding protein 1-like isoform X2 140 235 - -
Mibi04g0361 420 Gene3D - 139 236 IPR012677 -
Mibi04g0361 420 Gene3D - 1 138 IPR012677 -
Mibi04g0361 420 CDD RRM3_TIA1_like 263 338 - -
Mibi04g0361 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
Mibi04g0361 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 322 IPR000504 GO:0003723
Mibi04g0361 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Mibi04g0361 420 FunFam oligouridylate-binding protein 1B-like isoform X2 1 139 - -
Mibi04g0361 420 CDD RRM1_TIA1_like 59 129 - -
Mibi04g0361 420 SUPERFAMILY RNA-binding domain, RBD 41 135 IPR035979 GO:0003676
Mibi04g0361 420 SMART rrm1_1 58 127 IPR000504 GO:0003723
Mibi04g0361 420 SMART rrm1_1 264 334 IPR000504 GO:0003723
Mibi04g0361 420 SMART rrm1_1 143 216 IPR000504 GO:0003723
Mibi04g0361 420 MobiDBLite consensus disorder prediction 220 262 - -
Mibi04g0361 420 CDD RRM2_PUB1 143 217 - -
Mibi04g0361 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Mibi04g0361 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 338 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0361 Mibi-ChrMibi04 6192442 6197009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0361 52 330 Eukaryotic Initiation Factors Gene Family AT1G22760 25.170 2.00e-15 76.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi04g0361 04 6192442 6197009 Mibi04g0361 04 6192442 6197009 ECH