Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0286 ATGGCGAACCCTGCGCAGCAATCCTTGCGTGTGGGGTATCGATTCCATCCAACAGATGAAGAACTCATCAGTTACTACCTCACCAACAAATTGATCGGTCAAGATTTCGTCCTCAAGATTATCCCTGTGATCGACCTTTGTAAATACGATCCCTGGGATTTACCAGACCCGGAATGGTTTTTCTTCTGTCCTCGCGTTTACAAGTACTCTACAAAGAACAAGCGCACTGACAGGGCAACACCACGTGGCTTCTGGAAACCCACTGGCGCAGACAGGTATATCAAGAAACAAGGTAGCAATGATGTCATTGGGACCAAGAAGACTCTTGTTTTCTATCAAGGTCGTGTTCCTCGTGCCGTCAAGACCAACTGGGTCATCCATGAATATCAAGCTAAAGCATTTCCTAATGAACAGGGGTCCTTTGTTCTATGCAAATTAAAGAAGAAACTTGATGAAGCAGAGGGTAGAACTGACTGTGATGAGGGGGAGCCAAGTGTGGCTCCTAACTTTGAAGTTCCAGCTAGTGAGGGTAGAATTCCAGATGTGCCCTCTTCGCCCTCAAACAATCTGTTTTCAATTTTACATACACACCCAGCAGATGAAGTTGACTTAAGCCCCTTTTTTGTCTCTTCAATGGTCAATGACCATGAAACTTCTTTCCATTTTTCCCCAGCGCTCAATTCCAACACTGGAAATGACGTTGGCAGTGTACACTGGTTTTGGACTACCGAAGAGGAAGACAATGCTGACCAGTTTGTGAATTCAACATTAAACTTGCCTTATGAAACTACTGAAGGGGAAGACAATGATGACCAGTTTGTGAATTCAATCTTGAACTTGCCTTTTGAAACTACTGAAGAGGAAGACAATGCCGGCAGGTTTGTGAATTCAACCTTTTTGGATGATGAGGAGGAAGTGTTCTTGAGCCAGGACGGAGTGATGCCTTCTATCCATGCGCACACCCCTTCAGAATCTGTAAGTGCGTACTGGGAAAACAGTGACACAGATGCAGAAGTTGTCTCTGCACAGTATGGATACATTCCAGATACTTCGGTTAAATCTATTAAAATTGGAAGATTCTTTCAAGATGATTTGGACTCGTCCTCTGGTGACTCAAGCTATGCCAGACCACCCAAGATCAATCGGACAAAGCATGGAAACTCTGCTTCCACCCTTAAGACATTGAAAACCCAATATCAACCAAGATCAGCTGAATCTGTGTCACTGAGAGCTGGGGCTAGAAGATCTCAGACACATAAGAAGATTTCAACCAAAGGGGCATACCATGAGGCTCAGAAAGAAACACTGGAGCGTTCAAACAATAATGAGAGAGGAGCCCTGTCGATAAAAGCATATCCTTGTAAAGTGCCATTTGAACTTTGTGCTTGTAGAATCAAATTTTATGCAGAATCCTAA 1416 0.4386 MANPAQQSLRVGYRFHPTDEELISYYLTNKLIGQDFVLKIIPVIDLCKYDPWDLPDPEWFFFCPRVYKYSTKNKRTDRATPRGFWKPTGADRYIKKQGSNDVIGTKKTLVFYQGRVPRAVKTNWVIHEYQAKAFPNEQGSFVLCKLKKKLDEAEGRTDCDEGEPSVAPNFEVPASEGRIPDVPSSPSNNLFSILHTHPADEVDLSPFFVSSMVNDHETSFHFSPALNSNTGNDVGSVHWFWTTEEEDNADQFVNSTLNLPYETTEGEDNDDQFVNSILNLPFETTEEEDNAGRFVNSTFLDDEEEVFLSQDGVMPSIHAHTPSESVSAYWENSDTDAEVVSAQYGYIPDTSVKSIKIGRFFQDDLDSSSGDSSYARPPKINRTKHGNSASTLKTLKTQYQPRSAESVSLRAGARRSQTHKKISTKGAYHEAQKETLERSNNNERGALSIKAYPCKVPFELCACRIKFYAES 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0286 471 Gene3D NAC domain 18 153 IPR036093 GO:0003677|GO:0006355
Mibi04g0286 471 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 267 - -
Mibi04g0286 471 MobiDBLite consensus disorder prediction 366 390 - -
Mibi04g0286 471 MobiDBLite consensus disorder prediction 423 439 - -
Mibi04g0286 471 MobiDBLite consensus disorder prediction 403 439 - -
Mibi04g0286 471 Pfam No apical meristem (NAM) protein 11 130 IPR003441 GO:0003677|GO:0006355
Mibi04g0286 471 ProSiteProfiles NAC domain profile. 9 149 IPR003441 GO:0003677|GO:0006355
Mibi04g0286 471 SUPERFAMILY NAC domain 5 149 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0286 Mibi-ChrMibi04 5216557 5220831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0286 12 149 NAC Transcription Factor Family AT4G17980 50.980 5.21e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mibi04g0286 NAM 3.8e-31 No_clan