Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0248 ATGGAAGCTATTCTTTGTCTCTCTCCTTCTTCCTTCTCACCTTCAAGAACCAACCCTCAAATCTCAGCTTCATCGAAACGTTTCACTTCATCCTCATTGTTTCTTCCTTCTTCGTTTCATTCATCATTATCTCTCGCCGCTACCTTATTTCCCAAGTCTTTCACTTCTTCTTCCTCTTCTTTATGGAAGCGGCAAAGAAGCACGAAAAGTGGGGTTTTTATGGTTTTGGCTGTGGTGGATGAAAAAACTGTGCTTTCGGAAGAAATTGATGGAGACAAATATGTGGATGAGGAAATCGAAGATGTTTCCCTTGAGAGAGAACAAAGCAAAGAGGGAAGACCGTGTGAGTTATATGTTTGTAATCTTCCAAGGAGATGTGATTCAACGCAGCTTCACGATATGTTCTATCCTTATGGAACTGTTCTATCTGCTGAGGTTGATCGTAATGATGAGACTGGTGAAAGTAGAGGATGTGGTTATGTCACAATGGGATCAATAAACTCGGCAAAAAAAGCAGTTGCTGCATTGGATGGATCAGATCTTGGTGGGCGAGAAATGCGGGTTAGATTTTCAGCTGAGATGAATCCTGGAAGGAGAAATGTTGAGACTATGAACTCGGCACCCCAGAAAGTTATATACTATGAAACTCCTTACAAGTTGTACGTTGGTAATCTTGCCAGGGCTGTTAAACCTGAAGACTTATGGAATCATTTTCGAAGATTTGGGACTGTAGTTAGTGTAAGAATATTGCATGATCATAAAGTAGGGAATGGCCGTATTTATGCATTTCTCTCCTTCCTTTCACAGTTTGAACGTGATGCAGCAATGTCTCTTAATGGAACCGAACTTTGTGGCCGTACACTAGTAGTGAGAGAAGGCAAAGAGAGGTTTATCCGATAG 900 0.4133 MEAILCLSPSSFSPSRTNPQISASSKRFTSSSLFLPSSFHSSLSLAATLFPKSFTSSSSSLWKRQRSTKSGVFMVLAVVDEKTVLSEEIDGDKYVDEEIEDVSLEREQSKEGRPCELYVCNLPRRCDSTQLHDMFYPYGTVLSAEVDRNDETGESRGCGYVTMGSINSAKKAVAALDGSDLGGREMRVRFSAEMNPGRRNVETMNSAPQKVIYYETPYKLYVGNLARAVKPEDLWNHFRRFGTVVSVRILHDHKVGNGRIYAFLSFLSQFERDAAMSLNGTELCGRTLVVREGKERFIR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0248 299 Gene3D - 64 197 IPR012677 -
Mibi04g0248 299 Gene3D - 198 296 IPR012677 -
Mibi04g0248 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Mibi04g0248 299 PANTHER OS02G0815200 PROTEIN 17 291 - -
Mibi04g0248 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 295 IPR000504 GO:0003723
Mibi04g0248 299 SUPERFAMILY RNA-binding domain, RBD 214 295 IPR035979 GO:0003676
Mibi04g0248 299 CDD RRM_SF 220 291 - -
Mibi04g0248 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 288 IPR000504 GO:0003723
Mibi04g0248 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 187 IPR000504 GO:0003723
Mibi04g0248 299 SMART rrm1_1 219 291 IPR000504 GO:0003723
Mibi04g0248 299 SMART rrm1_1 116 189 IPR000504 GO:0003723
Mibi04g0248 299 SUPERFAMILY RNA-binding domain, RBD 106 198 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0248 Mibi-ChrMibi04 4425000 4427434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0248 115 290 Eukaryotic Initiation Factors Gene Family AT2G23350 29.379 4.04e-12 64.7