Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0225 ATGTTAGATCATCACCATCATGCTATGGAATACTCTCATTTAGCAGAAATTGCAGAAGCAGAAGCTTATAGCAGCACAATTCAATCATCAGGAGGAGGAGGAGGAGTTACAAATAGGAAGAGGAAGGGAAGCAACAGAATCCAGAGAAGGTTTAGTGATGATCAGATCAGATCATTGGAATCCATGTTTGAGACAGAGTCAAGGCTTGAACCAAGGAAGAAGGTTCAGCTTGCAAGAGAGCTTGGGCTGCAGCCAAGGCAGGTTGCCATTTGGTTTCAGAACAAGAGGGCAAGATGGAAGTCAAAGCAGATTGAAAGAGATTATAGCATACTTAGAGCTAATTACACCAACTTGGCCTCCAAGTTTGAAGCTCTCAAGAAGGAGAAGGAAGCATTACTACTTCAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCACACGAGGAAGGTCATCAGGGATATGCACAGGTCCAACCAGCTAATAGCAGTGTATCAGAAAATGGGGACACCACTAAAATGAAAGCTGAGGAAAATCCAAGCTCAACAACAATGGAGAGATCAGAGCAGATGGTGGGTGTTCTATCAGATGATGATAGCAGCATAAAAGCAGAATACTTTGGGCTTGAAGATGAATCAACTCTTCTGAATTTTGTGGAGCAAGCAGATGATTCTCTGAATTTTGATTCTGATGAGTTGTTAGACCAGTCTGATGTTGGTTGCCAGTGGTGGGACTTCTGGACTGAAACTGTCCATCCTACAAGTCCTTTTTCACTTCAAGATAAAATTCTTGACATTGCAATGATCCTTCAACCACTAAGTTCAAGCTTGCTTAGCACTGGAGCTGCTCCTGGTGGGTAA 858 0.4277 MLDHHHHAMEYSHLAEIAEAEAYSSTIQSSGGGGGVTNRKRKGSNRIQRRFSDDQIRSLESMFETESRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQIERDYSILRANYTNLASKFEALKKEKEALLLQLQKLNDLIQKPHEEGHQGYAQVQPANSSVSENGDTTKMKAEENPSSTTMERSEQMVGVLSDDDSSIKAEYFGLEDESTLLNFVEQADDSLNFDSDELLDQSDVGCQWWDFWTETVHPTSPFSLQDKILDIAMILQPLSSSLLSTGAAPGG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0225 285 ProSitePatterns 'Homeobox' domain signature. 77 100 IPR017970 GO:0000981|GO:0006355
Mibi04g0225 285 MobiDBLite consensus disorder prediction 26 46 - -
Mibi04g0225 285 MobiDBLite consensus disorder prediction 151 188 - -
Mibi04g0225 285 MobiDBLite consensus disorder prediction 155 188 - -
Mibi04g0225 285 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
Mibi04g0225 285 SMART HOX_1 45 106 IPR001356 GO:0003677
Mibi04g0225 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 40 187 IPR045224 GO:0003700
Mibi04g0225 285 CDD homeodomain 46 103 IPR001356 GO:0003677
Mibi04g0225 285 Coils Coil 115 142 - -
Mibi04g0225 285 PRINTS Lambda-repressor HTH signature 73 82 IPR000047 GO:0003677
Mibi04g0225 285 PRINTS Lambda-repressor HTH signature 82 98 IPR000047 GO:0003677
Mibi04g0225 285 FunFam Homeobox-leucine zipper protein ATHB-7 31 102 - -
Mibi04g0225 285 Gene3D - 30 105 - -
Mibi04g0225 285 SUPERFAMILY Homeodomain-like 28 103 IPR009057 -
Mibi04g0225 285 Pfam Homeobox associated leucine zipper 102 143 IPR003106 GO:0006355|GO:0043565
Mibi04g0225 285 Pfam Homeodomain 48 100 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0225 Mibi-ChrMibi04 4107538 4109425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0225 17 247 Homeobox Transcription Factor Family AT2G46680 47.674 1.89e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi04g0225 Homeodomain 2.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi04g0225 04 4107538 4109425 Mibi04g0225 04 4107538 4109425 ECH