Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0205 ATGGAACCCGAAACACGACGGAAAATCGAGGAAACGGTGCTGGAAGTACTGAAGAATTCCAACATTGATGAAGCCACTGAGTTCACAGTCCGACTCGCTGCCTCGAAGCGGCTCGAGATGGATCTTTCTGGCTCGGAATACAAGCTTCTTGTGAGAGGTATTGTGGAATCTTATCTTCTCGCCATCGCAGAGGAAGAACGTAAAAGGGTTCATGCCTCTGTGCCAAATGCTCCAAAAGAGACAATAGAGGTCGTTCCAGAATCTGAGCAAGAGGTGAAGCCATACAAGGAGGTTACGGATGATGGGGAGAGAATAATTTGCCAGCTATCAAACAAGAGGAATGTGGTGGTTCATGATTTCAGAGGGAAAAAGTTAGTTTCAATCAGGGACTTCTATCTGAAAGATGGAAAGCTGCTTCCTTCAGCTAGAGGGATAAGTTTGCCATCTGATCAATGGTCTATCTTCAAGAAAAGTGTCCCTGCTATAGAGGAGGCTGTTGCAAAGATGGAAGCAAAGATGGGATACGATGTTCATGGTAAGCAAAATGGAGACGTGCTGAACACAAGTCAAGGTAATCAAAATGGAGATGTGCTGAACGCAACTCATGGTAAGCAAAATGGAGATGTGCTGAACACAACTCATGGTAAGCAAAATGGAGATGTGCTGAACCCAATTCTTGATGCTGCTCCTCCTGAACCTGTCCCTATTGAAATCAGCCGTTTTGATGGGAAAAATTACCATATCTGGATTCAGCAGATGGAATCACTCTTACAGCAACTAAAGATTGCATATGTTCTCACTGAACTATGCCCAAATGCTATACCAGGACCTCATTCAAGCGCCAAAGAAGTTGCTGAAGCCCAGGCAGCGGGAAGGAGGTGGTTGAGTGATGATTTCATGTGTCGGCGCAACATCTTGTGTTATTTATCCGATCACCTGTTTAATCGGTATGCTAATAGAAAAATGACTGCTAAAGAACTGTGGGAGGAGTTGAAACAAGTCTATTTGTATGAGGAATTTGGAACAAAGAGATCACGAGTGAAAAGGTACATTGAATTTGAGTTTGTGGAGGGAAAATCCATTTTTGAGCAAGCCCAAGATTTAAATACCATTGCAGATTCTGTTGTCTCAGCTGGAATGATGATCGAAGAAAATTTCCATGTCAGTGCCATCATCGCCAAGCTTCCTCCATCTTGGAAGGATGTACGCATCAAACTAATGCGCGAAGAGTGTTTACCGTTCTGGATGTTAATGGAACGTTTGAGGACGGAGGAAGAATCTCGCAATCAAGTCAAACAAATAGGCGAACCTTCCTGTAGTGACACTGGCTATCGCGAGGCCAGAAGATCTGATCCAAGAAGGACAGATATGGGGCTTTCTTCAAGCATGCATGGCCAGATGAATAGGCCAGACACGAATGCCAAGAGTATGGTCTGTAAAGTCTGTGGCAAGAAAGGGCATCTTTCCAGAAACTGTAGGAGAAGATCTGACCATCAGGCTAAAGGATCAAGAATAGAAGAAAATGGGCCCTCCACACCTGCAATTTCACAGGTTAACATGGTTGGTGTCTCTGAGTAG 1578 0.443 MEPETRRKIEETVLEVLKNSNIDEATEFTVRLAASKRLEMDLSGSEYKLLVRGIVESYLLAIAEEERKRVHASVPNAPKETIEVVPESEQEVKPYKEVTDDGERIICQLSNKRNVVVHDFRGKKLVSIRDFYLKDGKLLPSARGISLPSDQWSIFKKSVPAIEEAVAKMEAKMGYDVHGKQNGDVLNTSQGNQNGDVLNATHGKQNGDVLNTTHGKQNGDVLNPILDAAPPEPVPIEISRFDGKNYHIWIQQMESLLQQLKIAYVLTELCPNAIPGPHSSAKEVAEAQAAGRRWLSDDFMCRRNILCYLSDHLFNRYANRKMTAKELWEELKQVYLYEEFGTKRSRVKRYIEFEFVEGKSIFEQAQDLNTIADSVVSAGMMIEENFHVSAIIAKLPPSWKDVRIKLMREECLPFWMLMERLRTEEESRNQVKQIGEPSCSDTGYREARRSDPRRTDMGLSSSMHGQMNRPDTNAKSMVCKVCGKKGHLSRNCRRRSDHQAKGSRIEENGPSTPAISQVNMVGVSE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0205 525 FunFam RNA polymerase II transcriptional coactivator KELP 98 170 - -
Mibi04g0205 525 MobiDBLite consensus disorder prediction 426 472 - -
Mibi04g0205 525 MobiDBLite consensus disorder prediction 505 525 - -
Mibi04g0205 525 Pfam DEK C terminal domain 5 59 IPR014876 -
Mibi04g0205 525 MobiDBLite consensus disorder prediction 488 525 - -
Mibi04g0205 525 MobiDBLite consensus disorder prediction 456 472 - -
Mibi04g0205 525 Gene3D Transcriptional Coactivator Pc4; Chain A 96 174 IPR009044 GO:0003677|GO:0006355
Mibi04g0205 525 SUPERFAMILY Retrovirus zinc finger-like domains 464 500 IPR036875 GO:0003676|GO:0008270
Mibi04g0205 525 Pfam gag-polypeptide of LTR copia-type 294 430 - -
Mibi04g0205 525 SUPERFAMILY ssDNA-binding transcriptional regulator domain 106 168 IPR009044 GO:0003677|GO:0006355
Mibi04g0205 525 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 171 IPR045125 GO:0003713|GO:0060261
Mibi04g0205 525 ProSiteProfiles Zinc finger CCHC-type profile. 479 494 IPR001878 GO:0003676|GO:0008270
Mibi04g0205 525 Pfam Transcriptional Coactivator p15 (PC4) 107 157 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0205 Mibi-ChrMibi04 3654783 3658756 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Mibi04g0205 Retrotran_gag_2 4.5e-15 CL0523