Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0141 ATGATAATTAAGAAGGCTATGAAATCTGAAATTCCCAACCTGAAGCGATGCCAGTTAGATGAGCTTAATCCTGAAGAAGAAGACAGTACGCGTGTGGCGAATCCCAAGAAACGGAGGGCAAATGTGTTTTTACCCTCCGAGGAAGAATATTTGAGCAGCAGTAATGGATTTCTGTGCAGTAATGAATCGCATTGTGGTGGCGAATTACTGTCAAGCTCAGATTCAGTGAAGTCTAACGCTAAAACAGTATTAAAACCAGGCTCCAAAAAGGTTCAACCTCCATTATTACGGTCGTCACGAGGTCGCCACCAGATCCTTCCTTCGAGGTTCAGGGATTCAGTTCTTGGTACGTGGAAGAATAAAAGAATCCAAGTGGAGAACACAAATTTCAGTGGAATGGAATTTGCAAATCAGGGAGTTAGTGTTAGCTGTAATATGAAAAATTCAATGAGTTCTTCACATACTGAAATGGAGAAGGAAATAGTCTTGGAAGTGAAGCATGCGAAATCCTTTAGTACAGTGAGAACGATTAAAGCTCAGAATTGTGCTTTGGGAGCTAATTCTGAAGGGGTTGAACTGAAGACTAATGGGAAAGCTGAAAAGAGGACTGACATTTACGAACTCGAGGATTTTTCTTGCGGTGATATAGTTTGGGCGAAATGTGGGAAGAGGTATCCAGCTTGGCCTGCTATAGTGATTGATCCCATCTTGCAAGCTCCCAAATCGGTCCTGAACTGTTGTGTTCCAGGTGCAATTTGCGTTATATTCCAGGGGCAGACCCGGCTGTACAGGAGCAAACCAAGTGAGTTTCGCTTGGCATTAGAGGAGGCTTTGTTGGCTGAAGATGGTATTCTGGACTCACATTTGGGAACAGATATTATCTCTAAAAGTAATGTTGAAGTTCATCCCAGTGTAGATGTAGAAATTACTGGTTCATATGGTGATCAGGAAGACAACTGCCAGGACCAGGATGCTAGACTTTGTGCTGGATGTGTTGCAAAAATCCAAACAATATTGCGGCATTTGCAAAAAGATTTGGCATCACTCAGATGTTCAATAGAAAAAAAACAAGAACAAATGATACCTGAAGAGGTAACGGTGGTGTGCAATGGCACGGAAGGAACATACATTCCAAGTCTTCATTCAGTTATGTGCAAGTGTGGTTCTTGTGGGTCAAGGAAGCAGACACTGGGTGAATGGGAACGTCATACAGGTTGCAGAGCCAAAAAATGGAAATTCAGCGTGAAAATTACCGAGAACAATTCTCAAGGTGGGGTTTCCCTACAATTGGATCAGCAGAAGGTACTTACCTTTTTGCAAGTCCACCAAGAATGCTATGGGGTGAAGAACGTTAAGGATTTCACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAGCATGTGCTTGGTTCCGGCCTGAAGTTATTTTCAAGAACCACGAGGCAATGGAACCTGCCAGTGGAATCCTTAAAATCCCTCCAAATTCGTTTTCAAAGGTACAATATTTGGCAGAAAGGGCCCCAAAACCAGATTCAGTTCTGGTTGTGCATACACCCCAAGGGGTTTTCTCTCCCAGAACTGAACTTCAAAATCATAAGAGATGCTCCAGGGGATCGAGGCTAGTTTCACCAAATGATGTAGAAACTCTTGAAGAGTCCTCAACTTCTGAGATTAACCAGTCTGAGCCACCCTCTGCTGCCAGATGTCGGGTCTACAGAAGGCCTCTCAATAAGGAACGCCTTTATCATTTGCAGAAAACTGTAAAGCATCAAGTTTGCCATGGAAAATCTGGTATACATGGATGGGGCCTCTTTGCTCATCGTGATATAGAAGAAGGAGAGATGGTTGCTGAGTATTGTGGTGAGCAGTGCATGCCGAACTGCTATGCAAGGATTATAAGTATGGATGATGAGGAGAGCCGAATTGTTCTTATTGCCAAGACCAATATCTCTGCTGGTGAAGAATTAACGTATGACTACTTGTTCGATCCGGATGAGCTTGATGAACTAAAAGTTCCCTGTCATTGCAATGCCTCTAATTGTAGGAAATTCATGAATTAG 2142 0.4304 MIIKKAMKSEIPNLKRCQLDELNPEEEDSTRVANPKKRRANVFLPSEEEYLSSSNGFLCSNESHCGGELLSSSDSVKSNAKTVLKPGSKKVQPPLLRSSRGRHQILPSRFRDSVLGTWKNKRIQVENTNFSGMEFANQGVSVSCNMKNSMSSSHTEMEKEIVLEVKHAKSFSTVRTIKAQNCALGANSEGVELKTNGKAEKRTDIYELEDFSCGDIVWAKCGKRYPAWPAIVIDPILQAPKSVLNCCVPGAICVIFQGQTRLYRSKPSEFRLALEEALLAEDGILDSHLGTDIISKSNVEVHPSVDVEITGSYGDQEDNCQDQDARLCAGCVAKIQTILRHLQKDLASLRCSIEKKQEQMIPEEVTVVCNGTEGTYIPSLHSVMCKCGSCGSRKQTLGEWERHTGCRAKKWKFSVKITENNSQGGVSLQLDQQKVLTFLQVHQECYGVKNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVACAWFRPEVIFKNHEAMEPASGILKIPPNSFSKVQYLAERAPKPDSVLVVHTPQGVFSPRTELQNHKRCSRGSRLVSPNDVETLEESSTSEINQSEPPSAARCRVYRRPLNKERLYHLQKTVKHQVCHGKSGIHGWGLFAHRDIEEGEMVAEYCGEQCMPNCYARIISMDDEESRIVLIAKTNISAGEELTYDYLFDPDELDELKVPCHCNASNCRKFMN 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0141 713 SMART set_7 617 694 IPR001214 GO:0005515
Mibi04g0141 713 Pfam PHD-finger 439 463 - -
Mibi04g0141 713 Pfam SET domain 651 687 IPR001214 GO:0005515
Mibi04g0141 713 Gene3D SET domain 651 713 IPR046341 -
Mibi04g0141 713 PANTHER PHD FINGER PROTEINS 580 650 - -
Mibi04g0141 713 Gene3D - 201 282 - -
Mibi04g0141 713 Gene3D SET domain 551 650 IPR046341 -
Mibi04g0141 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 464 525 IPR013083 -
Mibi04g0141 713 SUPERFAMILY SET domain 610 710 IPR046341 -
Mibi04g0141 713 ProSiteProfiles Extended PHD (ePHD) domain profile. 468 527 IPR034732 -
Mibi04g0141 713 Pfam PHD-zinc-finger like domain 470 524 - -
Mibi04g0141 713 ProSiteProfiles Post-SET domain profile. 697 713 IPR003616 -
Mibi04g0141 713 Pfam PWWP domain 214 261 IPR000313 -
Mibi04g0141 713 Coils Coil 339 359 - -
Mibi04g0141 713 SMART PostSET_3 697 713 IPR003616 -
Mibi04g0141 713 SUPERFAMILY Tudor/PWWP/MBT 206 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0141 Mibi-ChrMibi04 2015283 2026721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0141 439 511 C2H2 Transcription Factor Family AT3G14740 44.872 1.09e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mibi04g0141 zf-HC5HC2H_2 2.2e-12 CL0390