LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi04g0120	ATGCGTGGACTCACCAAGACTTCCTGGCAGCCACTAAATTACTATCACGAGTTAAAGGGACAAAGTCACAAAACAGTTCGTGAGGAACTAGATGATGATTATAATCTTGTGTACCCAGGGTGGAAGCAGCATATATTAGACATGATGAGAGTTCAAAGCTGGAACAAGATATTACTAATGACGTGTGTGATGGCACTGCTTATTATAGCCTGTGTTCTTCGCACATTCCTTGATCTTTTCTACATTATTCTCCACCTAATACTTCAGTTTCGAGGTGGTTATATGGCCCCTTCTTCTCGAGTATTTGGTAGGGGTGAGCTCATTGATAATCCTAAGGCTACTGCAAAAAGATACTTATCATCCAAATTCATCATTGACATTCTATCAATTATTCCACTTCCCCAGGTGGTTGGCTCTGTCTGGTACCTACTTTCAGTGGAATCAGTGATTCGATGTTGGAGACTAGAATTGAAGTCTGCTAGTCTCCCTGCAACTACTGATATGAGCTGTAGACACCCTAATACAGCCACCTTGTTATTTCGCAATAGTCATTGCCCCTTGAAAAATCCTGATGAGATTTACGACCCAAGACTCTTCAATTTTGGAATATTTATTGATGCTCTAAGATTTCGTGTGGTGGAATCAACTTCCAATTATGGTCGAACGATCTTATACTGCCTTTGGTGGGGTCTGCGCAATGTGAGTTCTCTCGGGCAAAACCTCGATACTAGCACATCTATTGCTGAAATACTCTTCACTATCTTCATCTCCATCTTTGGGTTGACTTTATTCGCGTTACTCATTGGAAACATGCAGAAATATCTGCAATCCATGCAATCTACCGCTGTGAGAGCTGAAGAAATGAGAGTGAACAGACAGAATATAGAGAAATGGATGTCCCAGCGTATGCTGCCAGAGAACTTGAAGGAAAGAATTAGACGATATGAACATGACAAATGGCAAAAACATGAGGGTGTGGATGAGGAAACATTAATGCGCAATCTTCCTGAACATCTTACAAAATACATTAAGCGTCACCTTTTCTTGGATTTAATTAAAAGAGTGCCATTGTTTGGGGCAATGGATGATCAGTTGTTGGACGCACTTTGTGATAAGCTGAAGCTAGTACTTTATACAGAGAAGAGAGACATTATTCATGAAGGAGATCCAATGGATCGAATGATATTCATTATGCGGGGAAGCCTTGCAACTAATACAAAACATGGTGGGGTAACTGGTTTTTTAAACTTTCAGATCAAGGCAGGTGATTTTTGTGGAGATGAGCTTTTAACATGGGCCTTGGACCCCAACTCATCCTCAAATCTTCCCATTTCAACCAGAACAGTGGAATCTATATCAGAAGTTGAAGCCTTTGCTCTCATGGCTAATGACTTGAAGCATGTTGCTTCCCAATTTGGACGCCTTCACAAGGAACACATCCAGCACACTTTTAGGTAA	1458	0.4095	MRGLTKTSWQPLNYYHELKGQSHKTVREELDDDYNLVYPGWKQHILDMMRVQSWNKILLMTCVMALLIIACVLRTFLDLFYIILHLILQFRGGYMAPSSRVFGRGELIDNPKATAKRYLSSKFIIDILSIIPLPQVVGSVWYLLSVESVIRCWRLELKSASLPATTDMSCRHPNTATLLFRNSHCPLKNPDEIYDPRLFNFGIFIDALRFRVVESTSNYGRTILYCLWWGLRNVSSLGQNLDTSTSIAEILFTIFISIFGLTLFALLIGNMQKYLQSMQSTAVRAEEMRVNRQNIEKWMSQRMLPENLKERIRRYEHDKWQKHEGVDEETLMRNLPEHLTKYIKRHLFLDLIKRVPLFGAMDDQLLDALCDKLKLVLYTEKRDIIHEGDPMDRMIFIMRGSLATNTKHGGVTGFLNFQIKAGDFCGDELLTWALDPNSSSNLPISTRTVESISEVEAFALMANDLKHVASQFGRLHKEHIQHTFR	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi04g0120	485	Gene3D	Jelly Rolls	355	474	IPR014710	-
	Mibi04g0120	485	ProSiteProfiles	cAMP/cGMP binding motif profile.	357	485	IPR000595	-
	Mibi04g0120	485	SMART	cnmp_10	357	484	IPR000595	-
	Mibi04g0120	485	SUPERFAMILY	Voltage-gated potassium channels	59	321	-	-
	Mibi04g0120	485	CDD	CAP_ED	357	475	IPR000595	-
	Mibi04g0120	485	Pfam	Ion transport protein	220	281	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Mibi04g0120	485	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	45	136	-	-
	Mibi04g0120	485	SUPERFAMILY	cAMP-binding domain-like	286	476	IPR018490	-
	Mibi04g0120	485	Gene3D	Helix hairpin bin	280	347	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi04g0120	Mibi-ChrMibi04	1574317	1580550	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi04g0120	136	485	Ion Channels	AT5G53130	58.523	5.92e-136	407