Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0110 ATGGCTGATTCTGGTGACCCCCCGAAATCTGCTGAAAATCAACAATCTGAGCAAGTGTGTAATTTCTTCAAGAAACCGGTAAATAGGAAGAATTTAAGAAAACGTACTGTTGATGATGAGGATAACGATGAGGATTCAAGCTCTTTGTTACACATTCAGAAAAAACAGGTGAAGCCTGACAATAAGTTGTACTTTTCCACTGGTTCATCAAAAACCACTGCATCTAAAGTACAAGAGGAACCTGAAAAGAAAATGTTTCATTTCGAGTCTTCAAAAGAGATTCAAGTTGAACATGATAACAAAGCAACTGCCATCCTTGAGACTGAAACCGAGTTTTCTAAAGATGCTAGGGCTATTCGTGAGAGAGCCCTTAAGCAAGCAGAGGAGAGTTTGAAGGGTAAAAGTGCTAGTTCTGGAGGAGAAAAATTGTACAAGGGCATCAATAGTTACAAAGATTACAAGGCTGGCTTTCGTCGAGAGCAAACTGTTGCTAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTTAGGGCATCAGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGACATATGTAAGGATTACAAGGAGACTGGATATTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGAGATTACAAGTCTGGGTGGCAAATGGAGAAGGAATGGGAGGAGGCTGAGAAAGCCAGGAGAATGAGATTGGCTGCAGGGGAGGATTCGGACGAGGAGGGTGCGAATTTGAGTGATGATGATGATGATGATTCGTTACCATTTGCGTGTTTCATTTGCAGGAAGCCCTTTGTGGATCCTGTTGTAACAAACTGCAAGCACTACTTCTGCGAACATTGTGCATTGAAGCATCATGCAAAGAATAAGAAATGTTTTGTGTGCAACAAGCCTACTCTTGGCATTTTTAATGCAGCTCATGAGATACGCAAGAAGATGGCTGCAGAGGGTAAATAA 978 0.4182 MADSGDPPKSAENQQSEQVCNFFKKPVNRKNLRKRTVDDEDNDEDSSSLLHIQKKQVKPDNKLYFSTGSSKTTASKVQEEPEKKMFHFESSKEIQVEHDNKATAILETETEFSKDARAIRERALKQAEESLKGKSASSGGEKLYKGINSYKDYKAGFRREQTVASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARRMRLAAGEDSDEEGANLSDDDDDDSLPFACFICRKPFVDPVVTNCKHYFCEHCALKHHAKNKKCFVCNKPTLGIFNAAHEIRKKMAAEGK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0110 325 FunFam RING finger protein 113A 263 322 - -
Mibi04g0110 325 SUPERFAMILY CCCH zinc finger 187 219 IPR036855 GO:0046872
Mibi04g0110 325 SMART ring_2 265 302 IPR001841 -
Mibi04g0110 325 MobiDBLite consensus disorder prediction 235 255 - -
Mibi04g0110 325 MobiDBLite consensus disorder prediction 32 58 - -
Mibi04g0110 325 MobiDBLite consensus disorder prediction 8 22 - -
Mibi04g0110 325 Pfam Zinc finger, C3HC4 type (RING finger) 264 306 - -
Mibi04g0110 325 MobiDBLite consensus disorder prediction 1 82 - -
Mibi04g0110 325 ProSiteProfiles Zinc finger RING-type profile. 265 303 IPR001841 -
Mibi04g0110 325 PANTHER ZINC FINGER PROTEIN 183 15 323 IPR039971 -
Mibi04g0110 325 SUPERFAMILY RING/U-box 264 307 - -
Mibi04g0110 325 SMART c3hfinal6 188 215 IPR000571 GO:0046872
Mibi04g0110 325 CDD RING-HC_RNF113A_B 263 303 - -
Mibi04g0110 325 MobiDBLite consensus disorder prediction 60 75 - -
Mibi04g0110 325 ProSitePatterns Zinc finger RING-type signature. 280 289 IPR017907 -
Mibi04g0110 325 ProSiteProfiles Zinc finger C3H1-type profile. 188 216 IPR000571 GO:0046872
Mibi04g0110 325 FunFam Zinc finger CCCH domain-containing protein 1 186 220 - -
Mibi04g0110 325 Gene3D - 186 220 - -
Mibi04g0110 325 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 214 IPR000571 GO:0046872
Mibi04g0110 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 322 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0110 Mibi-ChrMibi04 1457848 1459635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0110 1 323 C2H2 Transcription Factor Family AT1G01350 66.369 1.08e-164 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi04g0110 zf-C3HC4_3 1.7e-08 CL0229