LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi04g0093	ATGAAGGCAACCAAATCGTATGAGCACAAAACCATCACTAACAAGCCCGTGAGAAACTTATCCTCTTCGGGTATCTCACAAAGAGTCGTTCGCATTTCCTTCGCAGACAACTACGCCACTGATGATTCTTCCACTGACGAAGAAGAGAGAGAAGGAAGATTAATATTCTCTCACCCAGTGAAGAAGAGGTTCGTTCATGAGATCAGAATCCAAGATTTCTCGAGTTTCATAGCTAGTAACAACAGAAAACTGAAGGATGATTCCAGACATGTTTTGAAGAAGAAGAAGAAGAAGAGGGAAAGAAGACGGCGTGAAATTATGGGGGGAAGGAAGAAATATCGGGGCGTACGGCAGAGACTATGGGGGAGGTGGGCGGCGGAGATAAGAGATCCGTACATCGGAGCTCGGAAATGGCTAGGAACATTTGACACGGCCGAGGAAGCTGCTTTGATGTATGACATGGAGGCTATTCGTCTAAGAGGACCCGATGCTCACACCAATTTAATCAAACCTCCACAAAAGAAACAACAACAACAACAACAACATGAATCTTCTATAGTCCTCAAGAAAAATCCTCCTATGGAGAATAACAATGAGTTTGTGTGTGATTCAAGGATGGATTATCCACAATTTTCATCGCCTACTTCTGTTCTTAGATACAGTGGGGGAGGGTCCTGTGTGATTGAAGAATCCAGAGAAGGAGTAGAAGAAGAAAAGTTCTTGTTTCCAGATTCTTCATCGTTAGAATTTGTGACATCTTGTTATCCAGATTATGATGAAACTTCTCTTAGCCCTCTTCTCTTCTTTGAATCTGGTGTGCCTCAGTTGATGATTTCCAGTGATATTTTGAGGGACGTTCCGTTTCAACTTGATGATGATTTTGAATCTTCCAAATGGGTTGTTGATCATTACTTTCAGGCTGATTAA	927	0.4218	MKATKSYEHKTITNKPVRNLSSSGISQRVVRISFADNYATDDSSTDEEEREGRLIFSHPVKKRFVHEIRIQDFSSFIASNNRKLKDDSRHVLKKKKKKRERRRREIMGGRKKYRGVRQRLWGRWAAEIRDPYIGARKWLGTFDTAEEAALMYDMEAIRLRGPDAHTNLIKPPQKKQQQQQQHESSIVLKKNPPMENNNEFVCDSRMDYPQFSSPTSVLRYSGGGSCVIEESREGVEEEKFLFPDSSSLEFVTSCYPDYDETSLSPLLFFESGVPQLMISSDILRDVPFQLDDDFESSKWVVDHYFQAD	308

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi04g0093	308	SUPERFAMILY	DNA-binding domain	112	168	IPR016177	GO:0003677
	Mibi04g0093	308	ProSiteProfiles	AP2/ERF domain profile.	112	169	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0093	308	FunFam	Ethylene-responsive transcription factor 2	111	170	-	-
	Mibi04g0093	308	MobiDBLite	consensus disorder prediction	170	184	-	-
	Mibi04g0093	308	Gene3D	AP2/ERF domain	111	169	IPR036955	GO:0003700\|GO:0006355
	Mibi04g0093	308	PRINTS	Ethylene responsive element binding protein signature	135	151	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0093	308	PRINTS	Ethylene responsive element binding protein signature	113	124	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0093	308	Pfam	AP2 domain	112	161	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0093	308	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	27	221	-	-
	Mibi04g0093	308	CDD	AP2	111	167	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0093	308	SMART	rav1_2	112	175	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0093	308	MobiDBLite	consensus disorder prediction	164	184	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi04g0093	Mibi-ChrMibi04	1255507	1256433	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi04g0093	1	220	AP2-EREBP Transcription Factor Family	AT4G27950	40.708	2.83e-38	136

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi04g0093		AP2	1.2e-11	CL0081