Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0065 ATGGATGAGGGAAAGCGTAAATCCAGGAAGGAAGATTATGAAGGGAAGGAAGAGGATTCTAAGAGGCATCGACGTGAACGAGATCGTGAGAAGACTAGTGATAAAGGTAAGGATAGAAGTGAAGGGAAGCATAGGGATAAAGAGAAGAGGGATCGTGAGAGTCGACACTATGAAAGAGAGAAAAGCAGTGATTCTGATGAAAGATTTGATAGAGAAAGAGAAAAGCATAGAGATAAGAAAAGCAGTGATTCTGATGAAAGATTTGATAGAGAAAGAGAAAAGCATAGAGATAAGGATAGGGATAAGGATAAGGATAGGACACGAGTTCATGATGAAGAAAGAGAAAGAGCTCGAGACAAGAAAAGGGAAAGAGACAAGGAAGTTAGGGAAAGGGAGAGGAGAGATAGGAGGGATAAAGGGAGGGATAAGGATAGGGATAGGGATAGGGAGCGCGATAGGAAAGAGTGTGAAGTTGAAAAAGAAAGGGGGAGGAGAGGTAGAGAGAGGGAGAAGCGTAAGGATGTTGATAGCGAGCATAGTGATGATGATTCCAGGGATAGAGAAAGAAAGCGGCACAAGAAAGATGATTATGATTCCAGGGATAGAGAAAGAAAGCGGCACAAGAAAGATGATGATGATTACAAGGGTAGAGAGCATGAGAAGAGTGTCAATAAGTCGAGCAGGCAAACTGAGAATAATGAGGAGAGCCCAAAGAAAAAGAGTGGCAATGATAACTCAGATGCCAATGAAACCAAACCAAGCCGTGAGGAGGAGTTAGAGGATGAACAGAGGATGTTGGATGAAGAGATGGAAAAGAGGAGAAGGAGAGTTCAGGAGTGGCAAGAGTTGAGGAGGAAGAGAGAAGAAGTTGAGAGAGAAAAGTATGGTGAAGCAAGTGCTGATGTACCCAAGTTTGGAAAGGCCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACCACTTCAGGGAAGCCAAATGCAGCTATGGATGTCAACAAAGATGACAAACCTTTGGACAGAGAACCTAAGGATTCAATGGCAGTAGATGTTAGAAATGGACCTGTTACATCTGATTTACCGGATGAAGCTAATGGTTCTCAAGCAGATGAGGAAATTGATCCATTGGACGCTTTCATGAATTCTATGGTATTGCCTGAAGTAGAAAAGCTGAATAATTCTGTGGCTTCTGAATCTTCTAATCTAGTTGCTGACTCAAAGCCCAAGGGTAATAAGGATGAGCATAGTAATGGTGGGAACCCTGGGAAAGAATCAAATAAATCAATTGGGAGAATAATTCCGGGTGAAGAGTCTGACTCAGATTATGAAGACCTTGAAATTGAGGGGGCTCCATCAGATGAAGATGATGATGAATTCATGAAAAGAGTAAAGAAGACCAAAGCTGAGAAACTTTCAATTGTTGACCACTCAAAGATTGACTATAAGCCATTCAGGAAAAATTTTTATATTGAAGTAAAGGAGATTGCAAAGATGACTCCTGAAGAAGTTGCAGCATACAGGAAGGAATTGGAGTTGAAGGTACATGGAAAGGATGTGCCAAAGCCTGTAAAGTCATGGAATCAGATTGGACTCACCAGCAAAATTTTGGAGACAATAAAGAAGCTAAGTTATGAAAAGCCAATGACTATTCAAGCTCAGGCCCTCCCTGTGATTATGAGTGGTAGAGATTGCATAGGAGTTGCTAAAACTGGGTCAGGAAAAACCCTTGCATTTGTCCTGCCAATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCGATTGGGCTTATAATGGCCCCTACAAGGGAGCTAGTTCAACAGATTCATAGTGATATAAAGAAATTCGCAAAAGTACTTGGTCTCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTCGCCCAGCAAATCAGTGAATTGAAACGTGGTACTGAGATAATTGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACGAGCGGTGGAAAGATAACTAATCTGCATAGAGTCACTTATTTGGTCATGGATGAGGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGACCAGATCGTCAAACTGTTCTCTTTTCTGCTACCTTTCCTCGTCAGGTTGAAATTCTGGCTCGTAAGATTTTGAACAAGCCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTTAACAAGGACATAGCACAGCTGGTAGAGGTGAGGCCAGAAAATGAGAGGTTCTTCAGGCTCTTAGAATTGCTTGGGGAATGGTATGAGAAGGGAAAGATCTTGATATTTGTCCACTCACAGGAGAAATGTGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGACGGATCGGGAATCCACAATTTCTGACTTCAAAAGCAATGTCTGCAATTTGTTGATTGCAACTAGTGTTGCTGCCAGGGGTTTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCAAATCACTATGAAGATTATGTACATCGTGTTGGACGGACTGGCCGAGCTGGTCGGAAGGGTTGTGCTATCACATTTATTTCAGAGGAAGAAGCACGATATGCACCAGATCTGGTCAAAGCATTGGAGCTATCTGAACAAATAGTTCCTGATGACCTGAAAGCTCTTGCAGATGGGTTTATGGCAAAAGTTAATCAAGGACTTGAGCAAGCCCATGGAACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGATAAGTCTGATTCCGAGGATGAAAATGAAGGTATTAGGAAGGCAGGAGGTGACATCTCACAGCATCCTGGGCTTGCACAGATTCTAGCTGCTGCCACCAAAGCAAACACCCCTGCAATGCCCTCTACTTCCCAGGTAATATCAAATGGTGGACTGCCTGTTTCCTTGCCTTCTGTTCTTGGCCTACAGACTGCAGGAGTCATGCCTGGGACAGGGCTGCCCATTGTTCCAACTGACGGAGCAACTCGGGCAGCAATAGCTGCTATGAACCTGCAAAATAAATTAGCCAAGATTACTGGTGCAATGGCTGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGGGGCAGTATTTCCCACCTGGCAAGGTCCCAGGACCTGGTGA 3270 0.4324 MDEGKRKSRKEDYEGKEEDSKRHRRERDREKTSDKGKDRSEGKHRDKEKRDRESRHYEREKSSDSDERFDREREKHRDKKSSDSDERFDREREKHRDKDRDKDKDRTRVHDEERERARDKKRERDKEVRERERRDRRDKGRDKDRDRDRERDRKECEVEKERGRRGREREKRKDVDSEHSDDDSRDRERKRHKKDDYDSRDRERKRHKKDDDDYKGREHEKSVNKSSRQTENNEESPKKKSGNDNSDANETKPSREEELEDEQRMLDEEMEKRRRRVQEWQELRRKREEVEREKYGEASADVPKFGKAWTLEGESDDEEGTTSGKPNAAMDVNKDDKPLDREPKDSMAVDVRNGPVTSDLPDEANGSQADEEIDPLDAFMNSMVLPEVEKLNNSVASESSNLVADSKPKGNKDEHSNGGNPGKESNKSIGRIIPGEESDSDYEDLEIEGAPSDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEIAKMTPEEVAAYRKELELKVHGKDVPKPVKSWNQIGLTSKILETIKKLSYEKPMTIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGTEIIVCTPGRMIDILCTSGGKITNLHRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKILNKPVEIQVGGRSVVNKDIAQLVEVRPENERFFRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLVKALELSEQIVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDENEGIRKAGGDISQHPGLAQILAAATKANTPAMPSTSQVISNGGLPVSLPSVLGLQTAGVMPGTGLPIVPTDGATRAAIAAMNLQNKLAKITGAMAEHYEAELEINDFPQNARWKGAVFPTWQGPRTW 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0065 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 882 IPR027417 -
Mibi04g0065 1089 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 524 552 IPR014014 GO:0003724
Mibi04g0065 1089 MobiDBLite consensus disorder prediction 940 973 - -
Mibi04g0065 1089 Pfam DEAD/DEAH box helicase 549 720 IPR011545 GO:0003676|GO:0005524
Mibi04g0065 1089 Gene3D - 476 732 IPR027417 -
Mibi04g0065 1089 CDD DEADc_DDX46 513 734 - -
Mibi04g0065 1089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 555 733 IPR014001 -
Mibi04g0065 1089 Coils Coil 110 130 - -
Mibi04g0065 1089 MobiDBLite consensus disorder prediction 330 348 - -
Mibi04g0065 1089 Pfam Helicase conserved C-terminal domain 760 866 IPR001650 -
Mibi04g0065 1089 MobiDBLite consensus disorder prediction 1 458 - -
Mibi04g0065 1089 MobiDBLite consensus disorder prediction 940 954 - -
Mibi04g0065 1089 FunFam probable ATP-dependent RNA helicase DDX17 486 736 - -
Mibi04g0065 1089 MobiDBLite consensus disorder prediction 1 300 - -
Mibi04g0065 1089 MobiDBLite consensus disorder prediction 392 406 - -
Mibi04g0065 1089 Gene3D - 733 908 IPR027417 -
Mibi04g0065 1089 SMART helicmild6 785 866 IPR001650 -
Mibi04g0065 1089 Coils Coil 256 293 - -
Mibi04g0065 1089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 761 905 IPR001650 -
Mibi04g0065 1089 MobiDBLite consensus disorder prediction 439 454 - -
Mibi04g0065 1089 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 679 687 IPR000629 -
Mibi04g0065 1089 SMART ultradead3 543 748 IPR014001 -
Mibi04g0065 1089 PANTHER RNA HELICASE 468 944 - -
Mibi04g0065 1089 CDD SF2_C_DEAD 745 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0065 Mibi-ChrMibi04 801403 804734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0065 522 886 Eukaryotic Initiation Factors Gene Family AT3G19760 32.249 6.73e-57 201