Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0056 ATGGCCGGGGCAAGGTTTTTCTATCTGAAATGTCTCCGGAGATATTCAGCTATGGGTTCATTAAACGTGGAATTAGTTCAGCCAAATCAACACGTTATGAACCTTACAAAATCTGTGGATTGCATTCCTTTAAGATTTCTGAGTACTTCATTCAGTAAAGCTTGTTCCAAAAGAGAGTTACAGTTACCTGAAATGTTTGCCAAGAACCAGTTTGGGACTACGACTTCTGGAAACAGCAATCTCTTCACTTCCAAACCCGGGGTTCCTTGTCCTCCTAAAATTTCTAGTTTTTTCTTCCATAAAGCCTTTCCTTTTGCTTCTCCTTCAATGACCCACTTGTTGAATCATCGATCATATTCGTCATCTCTGGGTGGCAATGGAAATAGAGATGGGAGCACTGATTTTCCATCTAATTCTGGGCCAAGTGACATGAATGCGAGCAGTGATTGGGCTGATAAAATCAAAGATGCTTGGCAGAGTGCAGTAGAGACAGTAACACATTCTGCACAAAAGGTTAAAGAAGCCTCTGATGAGCTGACTCCATATGCTCAACAGTTGCTGGACTCACATCCGTACCTTAATAATGTGATTATCCCAGTTGGTGGTACATTGACTGCCACACTCATAGCATGGATTGTGATGCCTAGGATTTTAAGAAAATTTTACAAATATTCAATGCAAGGTCCTGCTGCAATATTTCCAGGAAGCACATCTGAGAAGCAAGTTCCTTATGAGGAAAGTTTTTGGGGTGCTATGGAGGATCCAGTGCGATATTTGGTTACCTTCATGGCATTCTCACAGATTGGTGTTATGGTAGCTCCAACAACTGTGGCCTCACAATACCTTGCACAGACTTGGAGGGGTGCAGCGATCCTTTCATTTGTGTGGTTTTTATATCGATGGAAAACAAATGTCTGGGCACGTACTTTGGTAGGTCAAAATTTACTCGGGCTTGATCGAGATAAATTGCTCGCTCTAGACAAAATATCGTCTGTTGGTCTATTTGTGATTGGTATAATGGCTTTAGCTGAGGCTTGTGGGGTGGCTGTGCAATCTATTATAACTGTTGGTGGAATAGGAGGAGTTGCCACTGCTTTTGCTGCTAGAGACATACTTGGCAACGTATTCAGTGGGTTGTCTATGCAGTTTTCGAAGCCCTTTACAGTTGGAGATACGATAAAAGCCGGTTCCGTAGAGGGTCAGGTGGTGGAAATGGGACTTACTACTACATCATTGTTGAATGCTGAGAAGTTCCCAGTTATAGTGCCAAACTCACTTTTTTCTAGCCAGGTAATAGTGAACAAGTCCCGTGCTGAATGTCGTGCCATCTATTCAAAAATTCCATTGCGAATTGAGGATATAAATAAAATTCCCAAGATATCAGATGACATCAAGAACATGCTAAGAACAAATGCTAAGGTTTTCTTGGGGAAAGAAGTTCCTTACTGTTACTTGTCACGCATTGAAAGTTCATATGCAGAATTGACTATTGGATACAACCTCAAACACATGCGTAAAGATGAGTTGTTCTCTTCAGAACAAGAGATTCTGCTGCAGGCAGCCCAGATAATAAAGATGCATGGTGCTGACCTTGGCAATACCTGGCAAAACACGCCTTAA 1620 0.4185 MAGARFFYLKCLRRYSAMGSLNVELVQPNQHVMNLTKSVDCIPLRFLSTSFSKACSKRELQLPEMFAKNQFGTTTSGNSNLFTSKPGVPCPPKISSFFFHKAFPFASPSMTHLLNHRSYSSSLGGNGNRDGSTDFPSNSGPSDMNASSDWADKIKDAWQSAVETVTHSAQKVKEASDELTPYAQQLLDSHPYLNNVIIPVGGTLTATLIAWIVMPRILRKFYKYSMQGPAAIFPGSTSEKQVPYEESFWGAMEDPVRYLVTFMAFSQIGVMVAPTTVASQYLAQTWRGAAILSFVWFLYRWKTNVWARTLVGQNLLGLDRDKLLALDKISSVGLFVIGIMALAEACGVAVQSIITVGGIGGVATAFAARDILGNVFSGLSMQFSKPFTVGDTIKAGSVEGQVVEMGLTTTSLLNAEKFPVIVPNSLFSSQVIVNKSRAECRAIYSKIPLRIEDINKIPKISDDIKNMLRTNAKVFLGKEVPYCYLSRIESSYAELTIGYNLKHMRKDELFSSEQEILLQAAQIIKMHGADLGNTWQNTP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0056 539 Pfam Mechanosensitive ion channel 328 529 IPR006685 GO:0016020|GO:0055085
Mibi04g0056 539 SUPERFAMILY Sm-like ribonucleoproteins 370 435 IPR010920 -
Mibi04g0056 539 Gene3D - 281 385 - -
Mibi04g0056 539 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 283 369 IPR011014 GO:0016020
Mibi04g0056 539 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 150 534 - -
Mibi04g0056 539 MobiDBLite consensus disorder prediction 122 146 - -
Mibi04g0056 539 Gene3D - 386 434 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0056 Mibi-ChrMibi04 724163 727996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0056 104 538 Mechanosensitive Ion Channel Family AT4G00290 61.863 0.0 575