Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0052 ATGAAAGATCATACCAGGAGAACTGCATTTGATCGACTGGTTTCTCTTTCACAGTGCCAGCCAGTTTTGGAAGAGCATGAGTCATTAACCTCAAATGATGGTACAGCTGCTTCATTCAGTGCTGGATTGCTATCAAGTTTGAACTTGGAAACATCAACACCAGATACATTCCAGTCCCCTCCTGCTCCTTTGCCTTATGATGTGGTCTTTGGTCCACTATCAACGGATTCTGAATCTGAAAGAAAAACAGTCAGTGGTAGTAGTTTTGAAACATTAATTACATGTGAAGATCTCGAAGAATCCTATTGTAAAGCTCAAGCAAATTCTGAACTTCTATCTCTAAAGAAGACAGAACTATCAAAATCAAATGAATGTCATGAATTAATGACAGCAGAAGAAGAAGAAGCCTGTCCAATTTAATATGAGGTTGAGAATCCTAAAACTCTGACAAAGTGTGAACACCATTTTCACCTAGCTTGCATACTTGAGTGGATGGAAAGAAGTGACGCCTGTCCTATATGTGATCAGATTCATTTTGAAGCCATGCATTTTATTAAAGAGAATGGCACACTTGCAATGGTAGAGGAGAGAATGAGTTCATCCTCCGGCGAGGATGGCAGTGGCGGCGCCGCCCTGGAGACGACGGTGCTCCACCATGCTCCGGCGGGTCCCATTGAGACAAATGCAGGAGATTATCCTCCAATAAATACCTTGCAAGACGTGAAGTATGTGTGCTATGTGGAGACCTCAAAGGTTTGGGCCATTGCAGGCCCAATTGCTTTCAACATTCTCTGCAATTATGGCATCAATTCCTTCACCAACATCTTCGCAGGACACATTGGGGACATTGAATTATCTTCTGTAGCCATTGCTCTTTCCGTCGTTTCAAACTTCTCTTTTGGCTTCTTGCTTGGCATGGGAAGTGCACTTGAGACATTATGTGGGCAAGCATTTGGTGCAGGGCAAGTAGAAATGCTAGGAGTGTACATGCAACGTTCATGGATAATCCTAGTAGCAGCATGTTTCTTTCTTCTTCCTCTTTACATCTTTGCAAAGCCGATCCTGATCCTGCTAGGCCAAGAACATGACATAGCGGCCCTAGCAGGAACATTCACTATCCAAACAATCCCTCAAATGTTCTCTCTTGCCATCAACTTCCCCACACAGAAGTTCCTGCAAGCACAGAGCAAAGTGGGAGTTCTTGCTTGGATTGGATTCGCCGCGCTTTTTGTTCATGTCGGGATCCTCTATCTGTTTATCAAAGTGTTTGGTTGGGGCACAACTGGTGCTGCTGCAGCCTATGATATATCTGCTTGGGGGATCGCTTTGGCTCAAGTGGCTTATGTCGTTGGTTGGTGCAATGAGGGATGGAGAGGCTTGTCATGGCTTGCTTTTAAGGATCTTTGGGCTTTTGTGAAATTGTCCATTGCCTCTGCTATTATGCTTTGTTTGGAGATTTGGTACTTCATGACCATTATCGTTCTCACTGGTCACCTTGATAATCCAGTTATTGCCGTTGGCTCGCTTTCTATATGCATGAATGTGAATGGGTGGGAAGGCATGCTGTTCATAGGGATCAATGCAGCTATAAGTGTGAGGGTTTCTAATGAGCTAGGATCAGGACACCCAAGAGCTGCAAAGTTCTCTGTCATCGTCACGGTTATCGAGTCCCTCTTCATAGGGATAGTTTGTGCAGCCATTATTCTGATCACCAAAGATGATTTTGCTGGCATCTTCACTGACAGTGCAGACATGAAAAAAGCAGTTTCTCATTTAGCTTCCCTTCTTGGTGCAACCATGGTTCTAAATAGTGTTCAACCAGTTATATCAGGTGTTGCTGTAGGAGGAGGTTGGCAGGCTTTGGTAGCTTACATAAACCTATTCTGTTATTACATAATTGGACTTCCTCTTGGCTTTCTTCTTGGTTACAAATTGGGTTTGAAAGTAGAGGGCATTTGGATAGGCATGATATGTGGGACGTTGTTGCAGACACTAATATTGTTGTACATTATATATAAAACTAACTGGAATAAAGAGGTGGAACAAGCAACAGAAAGAATGCGAAGATGGACTGGACAAGAATTGGAACTTACACCATTATAA 2103 0.4322 MKDHTRRTAFDRLVSLSQCQPVLEEHESLTSNDGTAASFSAGLLSSLNLETSTPDTFQSPPAPLPYDVVFGPLSTDSESERKTVSGSSFETLITCEDLEESYCKAQANSELLSLKKTELSKSNECHELMTAEEEEACPIXYEVENPKTLTKCEHHFHLACILEWMERSDACPICDQIHFEAMHFIKENGTLAMVEERMSSSSGEDGSGGAALETTVLHHAPAGPIETNAGDYPPINTLQDVKYVCYVETSKVWAIAGPIAFNILCNYGINSFTNIFAGHIGDIELSSVAIALSVVSNFSFGFLLGMGSALETLCGQAFGAGQVEMLGVYMQRSWIILVAACFFLLPLYIFAKPILILLGQEHDIAALAGTFTIQTIPQMFSLAINFPTQKFLQAQSKVGVLAWIGFAALFVHVGILYLFIKVFGWGTTGAAAAYDISAWGIALAQVAYVVGWCNEGWRGLSWLAFKDLWAFVKLSIASAIMLCLEIWYFMTIIVLTGHLDNPVIAVGSLSICMNVNGWEGMLFIGINAAISVRVSNELGSGHPRAAKFSVIVTVIESLFIGIVCAAIILITKDDFAGIFTDSADMKKAVSHLASLLGATMVLNSVQPVISGVAVGGGWQALVAYINLFCYYIIGLPLGFLLGYKLGLKVEGIWIGMICGTLLQTLILLYIIYKTNWNKEVEQATERMRRWTGQELELTPL 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0052 700 ProSiteProfiles Zinc finger RING-type profile. 137 175 IPR001841 -
Mibi04g0052 700 SMART ring_2 137 174 IPR001841 -
Mibi04g0052 700 CDD MATE_eukaryotic 248 682 IPR045069 GO:0042910|GO:1990961
Mibi04g0052 700 Pfam MatE 258 417 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mibi04g0052 700 Pfam MatE 478 640 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mibi04g0052 700 Pfam RING-H2 zinc finger domain 135 174 IPR024766 GO:0008270
Mibi04g0052 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 190 IPR013083 -
Mibi04g0052 700 TIGRFAM matE: MATE efflux family protein 258 653 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mibi04g0052 700 SUPERFAMILY RING/U-box 132 183 - -
Mibi04g0052 700 Coils Coil 673 693 - -
Mibi04g0052 700 PANTHER MULTIDRUG RESISTANCE PROTEIN 243 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0052 Mibi-ChrMibi04 680529 693995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0052 19 176 C3H Transcription Factor Family AT4G00335 53.086 8.35e-51 173