Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0042 ATGGGGGAATTCGTAGGTGAGCCTAATCCAGGGGTGGTGGTCGAAGACAAAATCTATGTTGCTGTCTCTAAACATGTGAAAGATTGCAAATTAAATCTGATATGGGCGATACAAAATTCTGGGGGGAAGAAGATTTGCATCCTTCACGTCCATGAGCCTTCAACAATGATCCCCTTGATGGGTACAAAGTTTCCAGCAAGTACACTGGATGACCAGGAAGTTGAAGCATATAGGATAACAGAAAGGCAAAACATGCACAAAATTCTGAATGATTATCTTCTAATTTGTCAGCGGATGGGGGCCCGAGCAGAGAAACTGCATATTGAACGGGATTGCATTGAGAAAGGAATTGTGGAACTTGTATCAGAGTATGACATCCGGAAGCTCGTTATGGGAGCAGCATCTGATAAGTCCTATTCTAGGAAAATGATGGACTTGGGATCTAAGAAAGCCATCTATGTGCGAGAACAAGCTTCAGCTTCTTGTCAAATACAATTTATCTGCAAAGGGCACCTTATATACACAAGGTACAGTAGTTTGGACAAAAGTGAAGAAAAGGCTGCATCTCCTGTCCCACAGCAAAGGTCACAACCTAATGCTGGACGAGAACTCCACTTGAGATCTCAATCTATTGAACTTGGAAGGAATCATTGGGCGAGACTCACTAATCCAGCACAAGATCTATTCCGAAGAGTGAGGTCTGGCAATGCTATGCATGAAGGGAGCTTGGCAACTGTTTCTTCACCAGATGATACTGAAGGATTGTCTACTCCACATATCAGGTTGGGTACAGAAGTGAGTTCTGATGAGTCTGACGGACTGTCTGGAAGGAGTCCTTCAGTTTTCTCCACATTCTCTGATAGCGGTGAAGTCGAAGCAGCATCAACCCCAGACTTGATCACTGAGCAGATTGAGAATGTATTAGACTTGAGTGGACATTCTTCAGTTAAGGGGGATCTTTGTCATTCATCTCCTCCCATTGTACTGGATGGAGGAATGGACTATGCTCTCTATGATCAATTTGAGCAGGTCATGGGTGGGGCTGAAAATGGTAGGCAGGATGCATACCAAGAAACTGTTAGACAGGGGAAGACTGAAAAAGATGCCATTGACGCTATATGCAGGGCTAAAGCCTCTGAAATCTCATATACGGAGGAGTTGAAACTGAGGAAAGAGGTAGAGGAAGCACTGGCAAAAACAAATGAAGAAGTTGGAAAGATGAAGATCCAAAGAGATAAAGTAAATGAACAACTCCGACTTGCCTTAGATCAGAAATCATCACTAGAGAGTCAAATTTCATCATCCGAACTAATGGTAAAGGAATTGGAGCAGAAGATTATCTCTGCTGTAGGTCTGTTGCAAAGTTACAAGAAAGAAAGTGATGAATTGGAGATGCAGCGTGATAATGCATTGAGGGAGGCTGAAGAGTTGAGGAAAAAATCAGCCGTGGCCCCAGGCACGTATGTGCCTCAATTTTTCGTAGAGCTCTCTTTTCCTGAGATTGAAGAAGCAACAAATAGTTTTAATCAATCTCTAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATACTACGTCACACTGAGGTGGCTATCAAAATGTTGAACCCTAGCAGTTTGCAAGGGCCTTCAGAGTTTCAAAAGGAGGTTGACGTATTGAGCAAGTCAAGGCATCCCAATGTTATTACATTGATTGGAGCCTGTCCAGAATCCTGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAGGATCGGCTCAGCTGCAAGGATAACACACCCCCATTATCATGGCAAACTCGAATTCGCATTGCTGCAGAGCTCTGCTCTGCTCTCATCTTTCTTCATTCTAGTAAACCTCACAGCATTGTGCATGGTGACTTAAAACCCTCCAATATTCTCCTTGATGCAAACCTTGTTAGTAAGCTTAGTGACTTTGGAATCAGTCGTCTGTTACCTCATCACGGGAGTTCAAGTAACAAAACTACAGAGTGCTGGAGAACTGACCCAAAGGGCACTTTTGCCTACATGGATCCTGAATTCCTTGCTTCAGGGGAACTTACTCCAAAGTCAGATATATACTCACTTGGAATCATATTATTACGACTGTTGACTGGGAGACCAGCCTTGGGAATAAGGCAGGAAGTGAAAAGTGCATTGGATGATGGAAGGTTGAAATCCCTCTTGGATCCTTTGGCCGGAGACTGGCCATTTGTACAGGCCGATCAGTTGTGTCACTTGGCATTGAGATGTTGCGAGATGAACCGAAAGAGCCGGCCAGACCTTTATTCAGATGTCTGGAGGATTCTGGAACCAATGAGTGCTTCTTCTGGAGGGCTTTACCAAACCCCTTCATATTTCATTTGTCCAATCTTCCAGGAAGTGATGCAAGATCCGCATGTTGCTGCGGATGGATTTACTTACGAAGCAGAGGCTATACGAGGATGGTTGGACAGTGGTCATGAGGCTTCTCCAATGACAAATGATAAGCTTGCACATTGCAACCTTGTCCCTAACCTTGCCCTTCGCTCTGCAATCCAGGATTGGCTTCAAAATCGCTAA 2571 0.4395 MGEFVGEPNPGVVVEDKIYVAVSKHVKDCKLNLIWAIQNSGGKKICILHVHEPSTMIPLMGTKFPASTLDDQEVEAYRITERQNMHKILNDYLLICQRMGARAEKLHIERDCIEKGIVELVSEYDIRKLVMGAASDKSYSRKMMDLGSKKAIYVREQASASCQIQFICKGHLIYTRYSSLDKSEEKAASPVPQQRSQPNAGRELHLRSQSIELGRNHWARLTNPAQDLFRRVRSGNAMHEGSLATVSSPDDTEGLSTPHIRLGTEVSSDESDGLSGRSPSVFSTFSDSGEVEAASTPDLITEQIENVLDLSGHSSVKGDLCHSSPPIVLDGGMDYALYDQFEQVMGGAENGRQDAYQETVRQGKTEKDAIDAICRAKASEISYTEELKLRKEVEEALAKTNEEVGKMKIQRDKVNEQLRLALDQKSSLESQISSSELMVKELEQKIISAVGLLQSYKKESDELEMQRDNALREAEELRKKSAVAPGTYVPQFFVELSFPEIEEATNSFNQSLKIGEGGYGSIFKGILRHTEVAIKMLNPSSLQGPSEFQKEVDVLSKSRHPNVITLIGACPESWALVYEYLPNGSLEDRLSCKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLVSKLSDFGISRLLPHHGSSSNKTTECWRTDPKGTFAYMDPEFLASGELTPKSDIYSLGIILLRLLTGRPALGIRQEVKSALDDGRLKSLLDPLAGDWPFVQADQLCHLALRCCEMNRKSRPDLYSDVWRILEPMSASSGGLYQTPSYFICPIFQEVMQDPHVAADGFTYEAEAIRGWLDSGHEASPMTNDKLAHCNLVPNLALRSAIQDWLQNR 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0042 856 Gene3D HUPs 17 150 IPR014729 -
Mibi04g0042 856 CDD RING-Ubox_WDSUB1_like 790 831 - -
Mibi04g0042 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 856 IPR013083 -
Mibi04g0042 856 Gene3D Phosphorylase Kinase; domain 1 488 580 - -
Mibi04g0042 856 SMART Ubox_2 789 852 IPR003613 GO:0004842|GO:0016567
Mibi04g0042 856 MobiDBLite consensus disorder prediction 184 203 - -
Mibi04g0042 856 MobiDBLite consensus disorder prediction 264 288 - -
Mibi04g0042 856 Pfam U-box domain 787 855 IPR003613 GO:0004842|GO:0016567
Mibi04g0042 856 Gene3D Transferase(Phosphotransferase) domain 1 581 782 - -
Mibi04g0042 856 SMART serkin_6 508 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g0042 856 Pfam Protein kinase domain 509 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g0042 856 PANTHER OS02G0152300 PROTEIN 18 851 - -
Mibi04g0042 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Mibi04g0042 856 ProSiteProfiles Protein kinase domain profile. 508 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g0042 856 SUPERFAMILY RING/U-box 776 854 - -
Mibi04g0042 856 Coils Coil 383 480 - -
Mibi04g0042 856 ProSitePatterns Protein kinases ATP-binding region signature. 514 535 IPR017441 GO:0005524
Mibi04g0042 856 CDD STK_N 17 170 - -
Mibi04g0042 856 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 35 135 - -
Mibi04g0042 856 ProSiteProfiles U-box domain profile. 785 856 IPR003613 GO:0004842|GO:0016567
Mibi04g0042 856 MobiDBLite consensus disorder prediction 189 203 - -
Mibi04g0042 856 SUPERFAMILY Protein kinase-like (PK-like) 489 772 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0042 Mibi-ChrMibi04 544342 549670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0042 13 855 U-box Gene Family AT2G45910 53.927 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mibi04g0042 Pkinase 5.5e-44 CL0016