Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0013 ATGTCTTTCACGGGAACTTTGGATAAATGCAAGGCTTGCGACAAGACCGTTCATGTGGTGGACATGATGACTCTGGAAGGCACTCCCTACCATAAATCCTGCTTCAAGTGCAGCCACTGCAAGGGCTTTCTCTCCATGAGCAGCTACTCGTGGATGGACGGCGTCCTCTACTGCAAGCCCCATTTCGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAACTTCCAGTCAGTTGCGAGGTCCACTGAGAAGCCTGATCTGTCAAGGACAGCAAGCAAGTTGTCGTCGATGTTCAGTGGGACACAGGACAAGTGCGCAGTGTGCTCGAAGACGGTGTATCCTCTGGAGAAGATGACACTGGAGGGAGAGAGCTACCACAAGTCATGCTTCAGGTGCGCCCATGCAGGTTGCCCTCTCACACATTCCTCCTACGCCGCCCTAGACGGCGTCCTCTACTGCAGGCACCACTTTGCTCAGCTCTTCATGGAGAAGGGCAACTACAACCATGTCCTCCAGGCCGCCGCCCACAAGCGCAGCCCCAGCTCCGGCACCCCTCCTCCTGAGTCTGCCCATGATCATGTTGATACCAAGGACGACCACCCCAAACATGACCCTCATGATCATGATGAAGATGATGATAAACACAGCAGCTCTTAG 660 0.5364 MSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQSVARSTEKPDLSRTASKLSSMFSGTQDKCAVCSKTVYPLEKMTLEGESYHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSPSSGTPPPESAHDHVDTKDDHPKHDPHDHDEDDDKHSSS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0013 219 FunFam LIM domain and actin-binding 1 4 74 - -
Mibi04g0013 219 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Mibi04g0013 219 Gene3D Cysteine Rich Protein 5 98 - -
Mibi04g0013 219 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Mibi04g0013 219 MobiDBLite consensus disorder prediction 191 219 - -
Mibi04g0013 219 Pfam LIM domain 106 161 IPR001781 -
Mibi04g0013 219 Pfam LIM domain 10 65 IPR001781 -
Mibi04g0013 219 Gene3D Cysteine Rich Protein 100 170 - -
Mibi04g0013 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Mibi04g0013 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Mibi04g0013 219 SMART lim_4 9 61 IPR001781 -
Mibi04g0013 219 SMART lim_4 105 157 IPR001781 -
Mibi04g0013 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Mibi04g0013 219 PANTHER OS06G0237300 PROTEIN 6 102 IPR045268 -
Mibi04g0013 219 FunFam LIM domain and actin-binding 1 100 170 - -
Mibi04g0013 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 172 - -
Mibi04g0013 219 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Mibi04g0013 219 MobiDBLite consensus disorder prediction 175 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0013 Mibi-ChrMibi04 287460 289079 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mibi04g0013 LIM 1.5e-11 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi04g0013 04 287460 289079 Mibi04g0013 04 287460 289079 ECH