Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2297 ATGGATAAGTTACAGAAGCTCCCAATCTCATCCAACAAGGCAAGGTTGAATTGCTTCAATTTAAGACATATATTCAACCCCTTTCGTTTCTCGCTGCGACGTAGCCTCGAATTTTTCCTGCCCGGCGGAGTTTACAGAAGGACATGTCAGTTTGAATCGACAATTCGTGGTCTTGGATTTGGCCCTCTGCTCGTCCTCTCTGGGGATACTTACTTTTTATCCTCGGTTTTTCAGAATCATTTACCGGCGCAAAATTCAGGAATCGGAGCCATGCAGAGTCAGCTCGTGTGTAGTGGATGTAGGAGCATTTTGCTTTACCCTAGAGGAGCAACCAATGTTTGTTGTGCATTATGCAACACAGTTACCTCAGTGCCTCCACCGGGAATGGAAATGTCTCAGCTTTATTGTGGAGGTTGTCGGACGTTGCTAATGTACACACGTGGAGCTCCAAGTGTGAGGTGTTCTTGCTGTCAAACTGTAAACCTTGCTCCAGCTTCTAATCAACTCTCTCATATACAACAACAACAACAACAACAACTTGCTCATATACATTGTGGAAATTGCCGGACTACACTCATGTATCCATTTGGTGCTCCATCAGTCAAATGTGCAGTTTGTCACTATATTACTAATGTCAGTATGAGTAATGGAAGGATTCCAATTCCTGTCCACAGACCGAATGGAACAACCAACTCTGGGACATCGTCTTCTACCCCAACTAGCCAAACTGTCCTGGTTGAAAATCCTATGTCTGTTGATGCAAGTGGGAAACTGGTGAGCAATGTTGTTGTCGGCATTACTGCAGACAAGAAATAA 816 0.4424 MDKLQKLPISSNKARLNCFNLRHIFNPFRFSLRRSLEFFLPGGVYRRTCQFESTIRGLGFGPLLVLSGDTYFLSSVFQNHLPAQNSGIGAMQSQLVCSGCRSILLYPRGATNVCCALCNTVTSVPPPGMEMSQLYCGGCRTLLMYTRGAPSVRCSCCQTVNLAPASNQLSHIQQQQQQQLAHIHCGNCRTTLMYPFGAPSVKCAVCHYITNVSMSNGRIPIPVHRPNGTTNSGTSSSTPTSQTVLVENPMSVDASGKLVSNVVVGITADKK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2297 271 Pfam LSD1 zinc finger 136 160 IPR005735 -
Mibi03g2297 271 Pfam LSD1 zinc finger 185 209 IPR005735 -
Mibi03g2297 271 Pfam LSD1 zinc finger 97 121 IPR005735 -
Mibi03g2297 271 PANTHER PROTEIN LSD1 89 124 IPR040319 -
Mibi03g2297 271 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 94 124 IPR005735 -
Mibi03g2297 271 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 133 162 IPR005735 -
Mibi03g2297 271 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 182 211 IPR005735 -
Mibi03g2297 271 MobiDBLite consensus disorder prediction 223 242 - -
Mibi03g2297 271 MobiDBLite consensus disorder prediction 225 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2297 Mibi-ChrMibi03 59433864 59444197 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mibi03g2297 zf-LSD1 3.7e-11 No_clan