LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi03g2289	ATGGCTCTGCCTCTCGTTTTCATCTCTCTGATTCCACTGTCATTGGCTTCTCCTGACTGCAGCTCCACCTGTGGGAATCTCACAATCTCTCACCCCTTCGGGATGAATGACCCCAACTGCTACCATGACAAGTGGTTTGAAATCGAGTGCAAAAAAGACAGGGCATATCTGAAGCTCATACAGCTGGAAATCACCAAATTAGAGTACAATTCGTGCAAGGTTTGGGTCAACAATCCCATTTACTCTTGGAACTGCAAAAACAGGGCCACAAGTAGTCTTCCCATAAATATGGGTGGAGGTCCTTTTACTTACTCTCGAGAGGACAACCTGTTTCTGGGTGTGGGCTGCAACAAACAAGCTCTTCTTCAGCAAGGGGGCCACCACGGCGTCCATTTAGGAGGCTGCATCTCCATTTGCCCCAGCAGCAGCAACAAGAACAACCTTAATCATTCAGAAATTCCAGCCTGTCAGGGAAAGTATTGCTGCGCCACTTCCCTGCCTCGAAATCTGTCGGAATTCAGACCCACAATCCAATATGTGGCACCAAACAGTACAACTAAACATGATGGTGATGATGATGATGCTGATGATGATTGCAGTTATGCGCTTGTTGCTGAAGATAACGGCCTTCACGATTGGGGCGCCAGGATTGTGAGCAAGTTGAAGGACTTGGATAGCCTTCCTGCCGTCCTCCAATACCGTACCAGTTGCAGTGATTCCCAGGCGCTACTCAACTCACCCCTCTGTACCACTCCTTATGCTCCTTCTTCAGGTGGCCAAGGCAACTCTAGACCTAAATCTCAAGGCTTGTCGGTCATAGGGGTGGTGTTCTCGAGCCTGGTATCCATTGTATTCCTGGTTGGGTTGTGGATTCAGTACAAAATATTCAGGAAAAGTAGGATAAACAAGCGCAAGGAGAAATACTTCAGGCAAAATGGTGGCTTGCTGCTGCAAAGAAGAGAAGTGAGCTTCGACAAGACAAAACTGTTCAGCTCTAGGGACCTTGAGAGAGCCACCGATCGCTTCAACCACAACAGAGTGCTGGGCAAGGGAGGCCAAGGCACCGTCTACAAGGGCATGCTCTCCGATGGCCAGATCGTCGCCGTCAAGAAGCTCACACTCCATGGTAACGTCGAAGACTTCATCAACGAAGTTGTCATTCTCTCCCACATCAACCACAGAAATGTTGTGAGGCTCTTAGGGTTTTGCCTCGAGACTCAAGTTCCTTTACTTGTTTATGAGTTCATCCCAAACGGTAACCTCTACGAGCACCTGCACGAACACAATGAGGAGATATCAATGACGTGGGAGACTCGTTTGAGAATAGCCGGAGAGGTGGCGGGAGCCCTATTTTACTTGCACTCGGCGGCTTCTCGCCCCATTTACCACAGGGACATAAAGTCAACCAACATTCTCTTGGACGAGAAGCTGAGAGCAAAAGTGGCAGATTTTGGGGCCTCAAGAATGGTGTCCATGGAGAAGACACACCTGACGACTCAAGTTCAGGGGACGTTTGGGTACTTGGATCCAGAGTATTTTCAGACTAGTCAGTTCACAGACAAGAGCGATGTGTACAGCTTTGGGGTTGTTCTTGTTGAGCTGCTCACAGGTGAAGTTGCCATATCAACGGGGAGGCCGGCGGAAACTCAGAGTTTGGCCTCCTATTTCATGATGAGTATGGAGGAAGGTCGTTTTGATGGTATTGTGGACCAGAGGATCAGGGAGGGTGCCAAAGAAGATGTGATAGGAGTGGCCAACCTGGCGAGGAGGTGCTTGAGCTTGAATGGGAGGAATAGGCCCAGCATGAGAGAAGTTACAATGGAACTTGAAAGGATTCAGGGACTGAGAAGGAGGTCCATGTCGAACGTAGGGCAGCAAGATTATGAGGAAATTGAGTTCGGGGGATCATTTGAAGCCCACCACAATTTGACTACTGCTGATGATTACGCATCAACTGGATCCACTCTAAATACCATACCTTCCTCATCGTCCTCCCACGGCTTGCTTGTTTACGACACCACCTAA	2025	0.4899	MALPLVFISLIPLSLASPDCSSTCGNLTISHPFGMNDPNCYHDKWFEIECKKDRAYLKLIQLEITKLEYNSCKVWVNNPIYSWNCKNRATSSLPINMGGGPFTYSREDNLFLGVGCNKQALLQQGGHHGVHLGGCISICPSSSNKNNLNHSEIPACQGKYCCATSLPRNLSEFRPTIQYVAPNSTTKHDGDDDDADDDCSYALVAEDNGLHDWGARIVSKLKDLDSLPAVLQYRTSCSDSQALLNSPLCTTPYAPSSGGQGNSRPKSQGLSVIGVVFSSLVSIVFLVGLWIQYKIFRKSRINKRKEKYFRQNGGLLLQRREVSFDKTKLFSSRDLERATDRFNHNRVLGKGGQGTVYKGMLSDGQIVAVKKLTLHGNVEDFINEVVILSHINHRNVVRLLGFCLETQVPLLVYEFIPNGNLYEHLHEHNEEISMTWETRLRIAGEVAGALFYLHSAASRPIYHRDIKSTNILLDEKLRAKVADFGASRMVSMEKTHLTTQVQGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELLTGEVAISTGRPAETQSLASYFMMSMEEGRFDGIVDQRIREGAKEDVIGVANLARRCLSLNGRNRPSMREVTMELERIQGLRRRSMSNVGQQDYEEIEFGGSFEAHHNLTTADDYASTGSTLNTIPSSSSSHGLLVYDTT	674

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi03g2289	674	Pfam	Protein kinase domain	343	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g2289	674	SMART	serkin_6	342	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g2289	674	CDD	STKc_IRAK	348	612	-	-
	Mibi03g2289	674	Pfam	Wall-associated receptor kinase galacturonan-binding	20	77	IPR025287	GO:0030247
	Mibi03g2289	674	FunFam	Wall-associated receptor kinase 2	416	632	-	-
	Mibi03g2289	674	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	16	620	IPR045274	GO:0007166
	Mibi03g2289	674	SUPERFAMILY	Protein kinase-like (PK-like)	324	610	IPR011009	-
	Mibi03g2289	674	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	461	473	IPR008271	GO:0004672\|GO:0006468
	Mibi03g2289	674	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	316	415	-	-
	Mibi03g2289	674	Gene3D	Phosphorylase Kinase; domain 1	316	415	-	-
	Mibi03g2289	674	ProSiteProfiles	Protein kinase domain profile.	342	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g2289	674	Gene3D	Transferase(Phosphotransferase) domain 1	416	633	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi03g2289	Mibi-ChrMibi03	59287503	59291213	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi03g2289	9	664	Receptor kinase-like Gene Family	AT1G16260	41.525	1.16e-159	475

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Mibi03g2289		Pkinase	3.3e-47	CL0016