Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2248 ATGTTCCACCTGCCACGTCACCCCCTCCACGAACCAACGATCGGGAAAACCAGCGCAGCGAGAGAAGGTGACGGTGCCTTCTTCTCCCTTTTCTCTTGGAGATTTCTTTCAGATTTGGGCACAGTCTTGCGCGTGAACTTGGAAACTATGACTTCATCTGATCATGACCTCATTGATAATGAAGCTGATGAACAGCAACAGCAATCAAACTTAGAGACTACAAACGGAATTTCTGATTCAGGAATTGCTACCCAGAATGGTCAGTATGCAGTGCCTCCTTCACAGATTGGAACTGGACATGCTATGGCACCAGTTTATCCATACCCAGATCCTTACTATAGGAGCATCTTTGCTCCATATGAGGCGCAACCTTATACCCAACAAGGGCCACAGCCCTATGGAGCACAACCGATGGTTCATCTTCAGTTAATGGGAATTCAACAAGCTGGTGTTCCTCTACCAACAGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAGTATCATGGTATATTGAGACGTAGACAGTCTCGTGCCAAAGCTGAATCATTAAATAAAGTTATCAAGAATCGCAAGCCATATTTGCATGAATCCCGGCATTTGCATGCATTGAGAAGAGCACGAGGATGTGGAGGTCGGTTTCTTAATTCAAAGAAAAGCGACAACCAACAGGATGAGGTGTCATCAGCAGATAAATCACTGTCCAATACTAATCTCAATCCTGACCAAAATGATCTTGCTTCATCAGATAGGATTTCTTAA 765 0.4431 MFHLPRHPLHEPTIGKTSAAREGDGAFFSLFSWRFLSDLGTVLRVNLETMTSSDHDLIDNEADEQQQQSNLETTNGISDSGIATQNGQYAVPPSQIGTGHAMAPVYPYPDPYYRSIFAPYEAQPYTQQGPQPYGAQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESLNKVIKNRKPYLHESRHLHALRRARGCGGRFLNSKKSDNQQDEVSSADKSLSNTNLNPDQNDLASSDRIS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2248 254 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 61 243 IPR001289 GO:0003700|GO:0006355
Mibi03g2248 254 MobiDBLite consensus disorder prediction 217 254 - -
Mibi03g2248 254 ProSitePatterns NF-YA/HAP2 subunit signature. 163 183 IPR018362 GO:0003677|GO:0016602
Mibi03g2248 254 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Mibi03g2248 254 MobiDBLite consensus disorder prediction 63 85 - -
Mibi03g2248 254 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Mibi03g2248 254 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
Mibi03g2248 254 MobiDBLite consensus disorder prediction 213 254 - -
Mibi03g2248 254 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 160 215 IPR001289 GO:0003700|GO:0006355
Mibi03g2248 254 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Mibi03g2248 254 Gene3D - 158 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2248 Mibi-ChrMibi03 58884156 58888664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g2248 50 254 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.825 7.30e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mibi03g2248 CBFB_NFYA 5.8e-26 No_clan