Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2243 ATGTTGGGTGGGCTATATGGAGACCTCCCTCCACCTTCATCCGCCGAAGAAGAGAAACCCAATAACACCAATGTATGGTCAAGCAGCACAAAGATGGCTCCTTCAACCCTTCGCAAGCCAGTTTTCGCGCCTCCTCAGACAATTCTTAGAACCCAGAACAAGCCCAAAGGCGTCAATTCTTCAGCCCCCAAAACAGTGACTTCTACGCCGGTGACGGTGGTGCCTGATGATGCAATACAGCCTGCTCTTGTGGGTGTGCAATCGACGGTGATGGAGGAGTATGACCCGGCGAGGCCGAATGACTATGAGGAGTATAGGAGGGAGAAGAAGAGGAAGGCTAGGGAGGCAGAGATGATGAAGGAGATTGAGAGGAGAAGGCAGGAGGAGGAGGAGAGGGAAAAGAGGGAGAAAGAGGAGAGGGAGAGAGAATATGGAGATTCAAGGTTGAACATTTCTGGGGAGGAAGCATGGAAAAGGCGTGCGGCTATGAGTGGGGCAGTGCCAAGATCTCCATCACCACCGCCTAATGGGGATGGATTTACTATTGGGAAGTCAGAGACAGGTGGTTTGGGGGTTGGTGCTGGTGGGCAGATGACGGCAGCTCAGAGAATGATGGCAAAGATGGGATGGAAGGAGGGGCAAGGGCTTGGGAGGCAGGAGCAGGGGATTACTACTCCGTTGATGGCGAGGAAAACAGATAGACGAGCTGGGGTCATTGTGAATGCTAGTGACAATAAGCCGGAGAAGAAGTTGAAGAGTGTGAGTTTCAATGGGCCACCTACGCGGGTGCTGCTTCTTAGGAACATGGTGGGTCCTGGTGAGGTAGACGATGAGCTTGAAGATGAGGTGGGATCAGAATGTGCCAAGTATGGTACTGTTACTCGGGTCCTGATATTTGAGATAACAGAGCCTAACTTCCCCTCCGATGAAGCCGTCAGAATCTTTGTGCAATTTGAGAGGTCCGAAGAAACAACTAAAGCCATTATTGATCTTGATGGTAGGTACTTTGGAGGTAGAGTGGTGCGAGCCTCATTTTATGATGAAGAGAGGTTTGGTAAGAATGAATTGGCTCCAATGCCAGGAGAAGTCCCTGGCTTTTTCTGA 1104 0.5082 MLGGLYGDLPPPSSAEEEKPNNTNVWSSSTKMAPSTLRKPVFAPPQTILRTQNKPKGVNSSAPKTVTSTPVTVVPDDAIQPALVGVQSTVMEEYDPARPNDYEEYRREKKRKAREAEMMKEIERRRQEEEEREKREKEEREREYGDSRLNISGEEAWKRRAAMSGAVPRSPSPPPNGDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNASDNKPEKKLKSVSFNGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPSDEAVRIFVQFERSEETTKAIIDLDGRYFGGRVVRASFYDEERFGKNELAPMPGEVPGFF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2243 367 PANTHER SPLICING FACTOR 45 SPF45 1 358 IPR040052 GO:0045292
Mibi03g2243 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 348 IPR000504 GO:0003723
Mibi03g2243 367 MobiDBLite consensus disorder prediction 16 35 - -
Mibi03g2243 367 FunFam Putative splicing factor 45 261 347 - -
Mibi03g2243 367 CDD RRM_UHM_SPF45 260 356 IPR034653 -
Mibi03g2243 367 SUPERFAMILY RNA-binding domain, RBD 265 350 IPR035979 GO:0003676
Mibi03g2243 367 Pfam G-patch domain 200 239 IPR000467 GO:0003676
Mibi03g2243 367 MobiDBLite consensus disorder prediction 46 73 - -
Mibi03g2243 367 MobiDBLite consensus disorder prediction 90 191 - -
Mibi03g2243 367 MobiDBLite consensus disorder prediction 96 155 - -
Mibi03g2243 367 SMART G-patch_5 195 241 IPR000467 GO:0003676
Mibi03g2243 367 PIRSF SPF45 3 148 IPR040052 GO:0045292
Mibi03g2243 367 PIRSF SPF45 134 363 IPR040052 GO:0045292
Mibi03g2243 367 ProSiteProfiles G-patch domain profile. 197 243 IPR000467 GO:0003676
Mibi03g2243 367 SMART rrm2_1 263 344 IPR003954 GO:0003676
Mibi03g2243 367 Gene3D - 261 347 IPR012677 -
Mibi03g2243 367 MobiDBLite consensus disorder prediction 1 73 - -
Mibi03g2243 367 Coils Coil 102 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2243 Mibi-ChrMibi03 58832152 58834839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g2243 203 251 C2H2 Transcription Factor Family AT5G26610 46.429 1.91e-06 47.4