Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2216 ATGGAAGATCACGCGGGTTTAGGAGGTGGAGTGTCTGTTAGTATTGGAAGGGAGGAAGAAGAAGATGATGAATTTTGCAGCTGTTGTGAGGATGAAGAAGAAGAACAATTAGGGAAAGAATCTGAGCAGCTGGTGGTGGATAAGTTGAAGGATGACTGTGATGAATCTTCAGTGAAAATGTTCTTCAAGGGCTTGTCTATAGCTGGGGCTGAAAATTCCATTTCTGGGTATTCTGGGATTGGAGTGGTCATGGAAAGACCCTCTGGTCTTCCAGCTATCCAGGTGCAGAAAAAACTTGATTTTTATGCAGAAAAGCTATTAGCTGAATACTTGGCTCTCATCGATGGCTTGCTTGAAGCTATGCGGAATAACATCCACCGGGTTTACGCATTTACAGACTCTGAGTTATTGTACGATCAGGTAACATTTGAGAAGAAACTTGAGATGCCTCTTTTGATAGCACTGAGAGAGAGGGTTCTTGAGCATGCCAATAATTTTGAGTCATTTGTTCTCAATCTTGTTCCTAGCATTGATCTTGAGAAACCGCTGCAATTAGCTAAAGTAGCTATTGGCCTTGTCTCTCTTCCTATAGATGGTGGGAAGGTGCTTGAAAGCTGTTCTATTTGTTGTGAGGACAAGCCATTGCCAATAATGATCACAATGAAATGCTCGCACAAGTTTTGTTCACATTGTTTGAGGGCTTATGTTGATGGAAAGGTTCAGTCTTGTCAAGTCCCTATTAGATGCCCTCAACCTAGATGCAAATATTACATCTCTACTGCAGAATGCAAGTCTTTTCTTCCATTTACCTCTTTTGAATCTTTGGAAAAAGCCCTTGCAGAAGCAAATGTTTCAGATAGAATTTACTGCCCATTTCCAAATTGTTCTGTTCTCCTTGACCCTCGTGAATGTTTATCATCAGCTGGGGCTAGTTCATCATCTAGCCAATCAGACAATTCTTGTGTGGAGTGTCCTGTTTGTCAGAGATTTATTTGTGTGGACTGCGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGAGTACCAGAATTTACCAGAGGAGGAGAGAGATGCTTCTGACATTACCTTGCATCTCCTAGCTCAAAATAAACGATGGAAACGTTGTCAGCAATGTCGACGGATGATTGAGCTGATGCAAGGTTGTTATCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGAGCCGAATATAGGGATGGCCAACAGACGTGTCAATGTGTGTTTTGGGATGAAGATAACTCTGAAGACTCAGTGAGTCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAAACTTTCAATTCTCTCCCCATGATCATGGATGCATACTCTGACCAAGAACGTTCGCAGCTCGCGCTTATTCAACGATTCCTTGCCGGGGGTTTCAGCCTGAGCGACCATCATCCTTGCCAATCCCCTCCCCATTGTACAGACTCCTACGTTGATGCCATGAAGGATCTACATCAGCTTCCGTGGCTCGAGCGATTTGTCTCTGTCATAAGTGACAACTACTATGAGGACTATATTCAGTAA 1563 0.4319 MEDHAGLGGGVSVSIGREEEEDDEFCSCCEDEEEEQLGKESEQLVVDKLKDDCDESSVKMFFKGLSIAGAENSISGYSGIGVVMERPSGLPAIQVQKKLDFYAEKLLAEYLALIDGLLEAMRNNIHRVYAFTDSELLYDQVTFEKKLEMPLLIALRERVLEHANNFESFVLNLVPSIDLEKPLQLAKVAIGLVSLPIDGGKVLESCSICCEDKPLPIMITMKCSHKFCSHCLRAYVDGKVQSCQVPIRCPQPRCKYYISTAECKSFLPFTSFESLEKALAEANVSDRIYCPFPNCSVLLDPRECLSSAGASSSSSQSDNSCVECPVCQRFICVDCEVPWHSSMSCEEYQNLPEEERDASDITLHLLAQNKRWKRCQQCRRMIELMQGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCVFWDEDNSEDSVSHSLQESEQWAWETFNSLPMIMDAYSDQERSQLALIQRFLAGGFSLSDHHPCQSPPHCTDSYVDAMKDLHQLPWLERFVSVISDNYYEDYIQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2216 520 FunFam RBR-type E3 ubiquitin transferase 201 286 - -
Mibi03g2216 520 SMART ibrneu5 273 345 IPR002867 -
Mibi03g2216 520 SMART ibrneu5 355 414 IPR002867 -
Mibi03g2216 520 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Mibi03g2216 520 Gene3D - 59 192 IPR036397 GO:0003676
Mibi03g2216 520 ProSiteProfiles TRIAD supradomain profile. 202 420 IPR044066 -
Mibi03g2216 520 Pfam IBR domain, a half RING-finger domain 282 345 IPR002867 -
Mibi03g2216 520 Pfam IBR domain, a half RING-finger domain 365 414 IPR002867 -
Mibi03g2216 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 285 IPR013083 -
Mibi03g2216 520 ProSiteProfiles Zinc finger RING-type profile. 206 253 IPR001841 -
Mibi03g2216 520 SUPERFAMILY RING/U-box 358 422 - -
Mibi03g2216 520 SUPERFAMILY Ribonuclease H-like 69 175 IPR012337 -
Mibi03g2216 520 FunFam RBR-type E3 ubiquitin transferase 58 193 - -
Mibi03g2216 520 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 64 467 IPR031127 GO:0004842|GO:0016567
Mibi03g2216 520 SUPERFAMILY RING/U-box 204 281 - -
Mibi03g2216 520 FunFam RBR-type E3 ubiquitin transferase 343 468 - -
Mibi03g2216 520 Gene3D - 342 468 - -
Mibi03g2216 520 Pfam Reverse transcriptase-like 69 175 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2216 Mibi-ChrMibi03 58492332 58496395 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g2216 108 405 C3H Transcription Factor Family AT2G19610 29.316 1.80e-30 121