Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2161 ATGGCGCCGAGTGTAAAAAATCTACAGCTAACTTCCCTCGCCGCCGCCTCCGCCGACGACGACGGCGGAGATGCCAATGGGATGGAGGAAGTTCGGCTTTTGGACTCATATGAAGACAGAAACTATGATGGGTCTGTTGGAATTGAAGAAGAAGAAGAAGGGCTTAAGCGAATTCATGTTAGAGTCATCGGTATGACTTGCGCTGCTTGCTCTAATTCTGTTGAAACAGCTTTGAATGCTGTTGATGGTGTCATTAGTGCTTCTGTGGCTTTGCTTCAGAACAAGGCTGACGTGGTTTTCAATCCTTCTCTTGTTAAGGATGCAGATATTAAAAATGCTATTGAAGATGCAGGATTTGAAGCAGAAATATTACCTGAACCCAGTGTTGATGCACTCAGGAAAAAGTCGCATGGAACCTTGGTGGGACAGTTCACAATCGGTGGTATGACATGTGCAGCCTGTGTAAATTCTGTTGAAGGTATTTTAAGAAATCTTCCAGGGGTCAAAAGGGCTGTGGTTGCTTTGGCTACTTCATTAGGAGAAGTAGAATATTATCCTAGTGTTACTAATAAAGATGAAATAATCAGTGCAATCGAAGATGCTGGTTTTGAAGGTTCATTTGTGCAGAGCAGTGAGCAGGATAAAATAACTTTATCCGTTGTTGGTGTATGCAGCCTGATTGATGCACAAGTCTTAGAAGGTATTCTTGGCAACATGAAAGGAGTAAGGCAGTTTCATTTTGACCAGATATCAAGTGATCTGGTGGTTCTTTTTGATCCTGAAGTTCTCAGTTCTAGATCCTTAGTTGATGAGATTGAAAGGGGGAGTAATGGTAAGTTTAAATTGCATGTCAGAAGCCCATATACAAGACTGGCTTCCAAAGATGTTGAGGAGACCTCGGGGATGTTTCGGCTTTTTATGTCCAGCCTATCTCTTAGTATTCCTCTCTTCTTCATGCGTGTGGTTTGCCCTCATATACCCATGGTGTATTCATTATTACTTTGGAGATGTGGACCTTTCCTCATGGGTGATTGGTTGAAGTGGGCTTTGGTGAGTGTTATTCAATTTGTAATTGGGAAGCGCTTCTACATTGCAGCTGGCCGAGCTCTCAGAAATGGTTCAACTAATATGGATGTCTTGGTTGCATTGGGAACTACAGCATCTTATGTTTATTCTGTTTGTGCTCTACTGTTTGGCGCTCTTACTGGATTTTGGTCTCCAACATATTTTGAGACCAGTGCCATGCTCATAACATTTGTATTGATGGGAAAGTACTTGGAATGCCTTGCCAAGGGAAAGACATCAGATGCCATCAAGAAGTTAGTAGAACTTGCTCCTGCAACAGCTATATTGGTTGTCAAAGATAAAGGTGGAAGATCTATTGAAGAAAGGGAAATAGATTCTTTGCTTATCCAACCTGGTGACACATTAAAAGTTCTCCCTGGTGCAAGGGTTCCCGCTGATGGCATTGTTACATGGGGCTCAAGTTATATAAATGAGAGCATGGTAACTGGTGAATCTGTTCCGGTTTCGAAGGAGGTGAATGCAACTGTTATTGGAGGTACAATAAATTTACATGGCATCCTTCTCATTGAAGCTACCAGAGTAGGATCTGATGGTGTCTTGAGTCAGATAATTAGCTTGGTTGAGACAGCTCAGATGTCCAAGGCCCCCATTCAGAAATTTGCTGATTATGTAGCAAGTATATTTGTTCCCACAGTTGTTGCCTTGGCCCTGTTGACATTATCAAGTTGGTATATTGCTGGGGCTCTGGGAGCTTACCCCGAAGAATGGTTGCCAGAAAATGGAAATCATTTTGTTTTTGCTCTCATGTTTTCAATATCTGTAGTGGTGATTGCATGTCCCTGTGCATTGGGCTTGGCAACACCAACAGCGGTCATGGTAGCTACAGGGGTTGGGGCTAACAATGGGGTGTTGATCAAAGGAGGAGACGCCTTGGAAAGGGCTCAGATGGTGAAGTACGTGATATTTGACAAAACTGGCACTTTAACTCAGGGAAAAGCTAGCTTTACCACTGCCAAGGTGTTCACTGGAATGGATCGTGGGGAATTTCTAAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTCGCCAAAGCAATAGTAGCATATGCACGTCATTTTCATTTCTTTGATGAATCCTCTGCAACTACTGGTATCAAAGATGATGCCAATGAGTTGAAGTCAGGGTGGCTTTATGATGTCTCTGACTTCTTGGCTCTTCCAGGAAGAGGCGTTCAGTGTTTCATAGATGGGAAGCATATATTGGTTGGTAATAGGAAATTAATGGAGGAAAGCGGCATAGATATTCCAACTGAAGTGGAAAATTTTGTGATCGAGCTGGAAGAAAATGCAAAGACAGGGATTCTGGTTGCATATGGTGATGGGCTTACAGGAGTTATAGGGGTTGCAGACCCACTGAAGAGAGAGGCTTCTGTGGTTATTGAGGGCCTCAAGAAAATGGGCATCAGACCTATTATGGTTACAGGAGATAACTGGAGAACGGCTCAAGCTGTTGCCAAGGAGGTTGGCATTCAAGATGTTAGGGCTGAGGTTCTGCCTGCAGGAAAGGCTGATGTTGTTCGTTCATTCCAGAAAGATGGAAGCATAGTTGCAATGGTGGGTGATGGTATCAATGACTCTCCCGCATTGGCCGCTGCCGATGTTGGTATTGCCATTGGGGCTGGGACTGATATTGCCATAGAAGCTGCTGATTATGTGTTGATGAGAAACAATTTGGAAGATGTAATCACTGCCATTGATCTCTCTAGGACAACCTTCTCTCGCATTCGGTTGAATTATTTCTTTGCAATGGCCTACAATGTGGTTGCCATACCAGTTGCTGCTGGGGTTCTCTATCCTTCACTTGGGATCAAGCTGCCTCCATGGGTAGCCGGTACATGCATGGCTCTCTCATCTGTAAGTGTTGTGTGTTCTTCTTTGCTTCTCAGGAGATATAGAAGACCTAAACTTACTGAAATACTTGAAATAATAGTAGATTAG 3030 0.4356 MAPSVKNLQLTSLAAASADDDGGDANGMEEVRLLDSYEDRNYDGSVGIEEEEEGLKRIHVRVIGMTCAACSNSVETALNAVDGVISASVALLQNKADVVFNPSLVKDADIKNAIEDAGFEAEILPEPSVDALRKKSHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYYPSVTNKDEIISAIEDAGFEGSFVQSSEQDKITLSVVGVCSLIDAQVLEGILGNMKGVRQFHFDQISSDLVVLFDPEVLSSRSLVDEIERGSNGKFKLHVRSPYTRLASKDVEETSGMFRLFMSSLSLSIPLFFMRVVCPHIPMVYSLLLWRCGPFLMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLFGALTGFWSPTYFETSAMLITFVLMGKYLECLAKGKTSDAIKKLVELAPATAILVVKDKGGRSIEEREIDSLLIQPGDTLKVLPGARVPADGIVTWGSSYINESMVTGESVPVSKEVNATVIGGTINLHGILLIEATRVGSDGVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVALALLTLSSWYIAGALGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKASFTTAKVFTGMDRGEFLKLVASAEASSEHPLAKAIVAYARHFHFFDESSATTGIKDDANELKSGWLYDVSDFLALPGRGVQCFIDGKHILVGNRKLMEESGIDIPTEVENFVIELEENAKTGILVAYGDGLTGVIGVADPLKREASVVIEGLKKMGIRPIMVTGDNWRTAQAVAKEVGIQDVRAEVLPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGIAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRTTFSRIRLNYFFAMAYNVVAIPVAAGVLYPSLGIKLPPWVAGTCMALSSVSVVCSSLLLRRYRRPKLTEILEIIVD 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2161 1009 CDD HMA 60 122 IPR006121 GO:0046872
Mibi03g2161 1009 CDD HMA 143 204 IPR006121 GO:0046872
Mibi03g2161 1009 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 377 992 IPR027256 GO:0006812|GO:0016020|GO:0019829
Mibi03g2161 1009 FunFam Copper-exporting P-type ATPase 763 814 - -
Mibi03g2161 1009 FunFam Copper-exporting P-type ATPase A 54 124 - -
Mibi03g2161 1009 ProSiteProfiles Heavy-metal-associated domain profile. 141 207 IPR006121 GO:0046872
Mibi03g2161 1009 SUPERFAMILY HMA, heavy metal-associated domain 53 127 IPR036163 GO:0046872
Mibi03g2161 1009 SFLD Haloacid Dehalogenase 645 934 - -
Mibi03g2161 1009 PRINTS Copper-transporting ATPase 1 signature 83 106 - -
Mibi03g2161 1009 PRINTS Copper-transporting ATPase 1 signature 57 82 - -
Mibi03g2161 1009 PRINTS Copper-transporting ATPase 1 signature 112 132 - -
Mibi03g2161 1009 FunFam Copper-exporting P-type ATPase A 139 208 - -
Mibi03g2161 1009 Gene3D - 630 940 IPR023214 -
Mibi03g2161 1009 Pfam haloacid dehalogenase-like hydrolase 659 897 - -
Mibi03g2161 1009 ProSitePatterns Heavy-metal-associated domain. 62 92 IPR017969 GO:0046872
Mibi03g2161 1009 SUPERFAMILY HMA, heavy metal-associated domain 140 210 IPR036163 GO:0046872
Mibi03g2161 1009 Pfam Heavy-metal-associated domain 60 120 IPR006121 GO:0046872
Mibi03g2161 1009 Pfam Heavy-metal-associated domain 144 204 IPR006121 GO:0046872
Mibi03g2161 1009 ProSiteProfiles Heavy-metal-associated domain profile. 215 273 IPR006121 GO:0046872
Mibi03g2161 1009 SUPERFAMILY Calcium ATPase, transmembrane domain M 404 959 IPR023298 -
Mibi03g2161 1009 Gene3D - 763 814 IPR023299 GO:0000166
Mibi03g2161 1009 Gene3D - 670 762 IPR023299 GO:0000166
Mibi03g2161 1009 FunFam Probable copper-transporting ATPase HMA5 787 940 - -
Mibi03g2161 1009 Gene3D - 431 553 - -
Mibi03g2161 1009 ProSiteProfiles Heavy-metal-associated domain profile. 57 123 IPR006121 GO:0046872
Mibi03g2161 1009 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 416 715 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi03g2161 1009 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 783 964 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi03g2161 1009 SUPERFAMILY HAD-like 662 989 IPR036412 -
Mibi03g2161 1009 FunFam Copper-transporting ATPase 1, putative 431 553 - -
Mibi03g2161 1009 TIGRFAM TIGR00003: copper ion binding protein 59 121 IPR006122 GO:0005507
Mibi03g2161 1009 Gene3D - 55 126 - -
Mibi03g2161 1009 ProSitePatterns E1-E2 ATPases phosphorylation site. 665 671 IPR018303 -
Mibi03g2161 1009 PRINTS P-type cation-transporting ATPase superfamily signature 883 902 - -
Mibi03g2161 1009 PRINTS P-type cation-transporting ATPase superfamily signature 830 840 - -
Mibi03g2161 1009 PRINTS P-type cation-transporting ATPase superfamily signature 499 513 - -
Mibi03g2161 1009 PRINTS P-type cation-transporting ATPase superfamily signature 808 819 - -
Mibi03g2161 1009 PRINTS P-type cation-transporting ATPase superfamily signature 906 918 - -
Mibi03g2161 1009 PRINTS P-type cation-transporting ATPase superfamily signature 663 677 - -
Mibi03g2161 1009 FunFam Copper-transporting ATPase RAN1 670 762 - -
Mibi03g2161 1009 CDD P-type_ATPase_Cu-like 304 979 - -
Mibi03g2161 1009 ProSitePatterns Heavy-metal-associated domain. 146 175 IPR017969 GO:0046872
Mibi03g2161 1009 SFLD p-type atpase 645 934 IPR044492 -
Mibi03g2161 1009 Gene3D - 142 207 - -
Mibi03g2161 1009 SUPERFAMILY Calcium ATPase, transduction domain A 463 549 IPR008250 -
Mibi03g2161 1009 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 29 1005 - -
Mibi03g2161 1009 Pfam E1-E2 ATPase 452 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2161 Mibi-ChrMibi03 57507394 57513530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g2161 1 1009 Primary Pumps ATPases AT5G44790 74.136 0.0 1495