Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2136 ATGGCAGATGGCACTGTTTCCCTCAAAGACGGCATTGCCGAAGCACCTCCGCCGTACACGGCGGCCGGAAACCTCACAAGCATTAACAATGGCTTAGACGAAAGTCTCAACCTCACGGCGGAGGAGATAACCTATCACCACCACCACCACCACCAGAATCATCCGCCACCGCACACGGAGGACGTCTCCGCCGCAACATTGGACATCTCTCACCCTGAACAACAACATCTTGTTCTGGGCGTAGAGAACTCATACAACAATGACAATTTAGTACATCAAGTCATTGATGTCCTCAATTATGATCAATCCACTTGGGACCCTAAAATTCAAGAGTTTCAGGGAATGGGACAATTCCAACAGCAACCACAACAATTTCATCAAATTGAGACCCAAAGTTACAATTCCTCTTCCATACTTGACCCTCCTTCTAATCTCCTGGACCTTCTCCATTACAATCCAGCTCAGAAGATACCTAATATCCCAAATTCCATGGGGTTTCTTGGAGACATTCCAATTGGATCAGATAGCACAAGCGCGTGCTCTGTCTTGTACGATCCTCTGCTTCACTTGAATCTGCCTCCACAGCCTGTGGCGCTGAGAGAGTTGTTTCAGGCCCTTCCTAGGGGTTACAGCTTGCCAACTAGTTCCAGGAATGGTTCCCTTTTTGGTGGTGGGGATGAGATAGAGGGGAATGGGATTGTGTATCAGGATGGTGATGGAAGCCAGCTTGATATTGGAGTTCTGGAATTTGACAGAGGTACTGCTCGTGTGGGTAAAGGAAGACAAGCAAAAGGCACCAAGCATTTTGCCACTGAGAAACAAAGAAGAGAGCAACTTAATGGAAAATACAATGTCTTGAGGAGTCTTATCCCAAGCCCCACCAAGGTGGATAGAGCATCTGTGGTGGGAGATGCCATTAACTATATCAAAGAGCTGATGAGAACAGTGAATGAGCTGAAATTGTTAGTGGAGAAGAAGAGGTTTGGGATGGACAGGTGCAAGAGGCACAAACCTGAGGATGATGCTGGAGAGAGTTGTAACATGAAGCCCTATGGTGACCATCATCCAGAAGGATGCATAAGGACCTCATGGCTACAAAGGAAATCCAAAGACACTGAGGTTGATGTCCGGATCATCGACGATGAAGTCACAATCAAGCTCGTTCAGAGGAAGAAGATCAGCTGCTTGCTGTTTGTCTCTAGGGTTCTTGATGAACTCCAGCTGGATCTTCACCATGTTGCAGGTGGACATGTCGGTGAATATTGCAGTTTCTTGTTCAACAGCAAGATATGTGAAGGTTCATCAGTGTATGCAAGCGCCATAGCCAACAAGGTGATTGAGGTTTTGGACAGGCAGTATGCAGCAGCTGTTCCACATACAACCAGTAGCTATTAA 1395 0.4688 MADGTVSLKDGIAEAPPPYTAAGNLTSINNGLDESLNLTAEEITYHHHHHHQNHPPPHTEDVSAATLDISHPEQQHLVLGVENSYNNDNLVHQVIDVLNYDQSTWDPKIQEFQGMGQFQQQPQQFHQIETQSYNSSSILDPPSNLLDLLHYNPAQKIPNIPNSMGFLGDIPIGSDSTSACSVLYDPLLHLNLPPQPVALRELFQALPRGYSLPTSSRNGSLFGGGDEIEGNGIVYQDGDGSQLDIGVLEFDRGTARVGKGRQAKGTKHFATEKQRREQLNGKYNVLRSLIPSPTKVDRASVVGDAINYIKELMRTVNELKLLVEKKRFGMDRCKRHKPEDDAGESCNMKPYGDHHPEGCIRTSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKISCLLFVSRVLDELQLDLHHVAGGHVGEYCSFLFNSKICEGSSVYASAIANKVIEVLDRQYAAAVPHTTSSY 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2136 464 Pfam Helix-loop-helix DNA-binding domain 266 312 IPR011598 GO:0046983
Mibi03g2136 464 SMART finulus 269 318 IPR011598 GO:0046983
Mibi03g2136 464 Gene3D - 260 331 IPR036638 GO:0046983
Mibi03g2136 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 312 IPR011598 GO:0046983
Mibi03g2136 464 PANTHER TRANSCRIPTION FACTOR BHLH91 42 456 IPR045895 GO:0006355|GO:0048658
Mibi03g2136 464 CDD bHLH_AtMYC1_like 268 329 IPR045896 -
Mibi03g2136 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 332 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2136 Mibi-ChrMibi03 57139180 57141784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g2136 88 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 42.643 1.82e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi03g2136 HLH 6.4e-11 No_clan