Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2120 ATGGGTCGTAGGAAGATCGAGATGAAGCTTGTGAAAGACTCAAACTCAAGGCAAGTGACATTCTCAAAGCGCCGCAATGGTGTCTTCAAGAAAGCCAACGAGCTTGTCACCTTATGTGGTGCTGAAGTTGCCGTCATCACCTTCTCCCCTGGCGGCAAGCCCTACTCCTACGGTCAGCCCGGAGTCAACGCGGTCGCCAACCGGTTCCTCCGCCGTGCTGCGGCCTCCTCGGTGGGCCCCACTCGCCGTGTCGGAGAAGATGAGATTGATAGGCTGAACAAGAAGCTGATGAGGCTGATGGCTGAGTCTGAGGCTGAGAAGAAGAAAGGAGAGATGCTTGATGAGAGGATGAGGAAGATGAATATGAAGGTGACTGCTAATGGGAGGATTCCATTGGATGGTATGAACATGGAGGAGCTTAAGAAGCTGAAGAAATCTCTGGAGGAAATGAAGGAGGATGTTGATGAGTGCAAGAAGGAATTGGAGGCTTCTTCTTGCCTGATGCTTCTTGCTGATCAGAAGGCTGTCAACAAGAAGAAAAAGATGAACAAGAAGAACTAA 561 0.5027 MGRRKIEMKLVKDSNSRQVTFSKRRNGVFKKANELVTLCGAEVAVITFSPGGKPYSYGQPGVNAVANRFLRRAAASSVGPTRRVGEDEIDRLNKKLMRLMAESEAEKKKGEMLDERMRKMNMKVTANGRIPLDGMNMEELKKLKKSLEEMKEDVDECKKELEASSCLMLLADQKAVNKKKKMNKKN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2120 186 Coils Coil 137 167 - -
Mibi03g2120 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi03g2120 186 Gene3D - 14 79 IPR036879 GO:0003677|GO:0046983
Mibi03g2120 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi03g2120 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi03g2120 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi03g2120 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mibi03g2120 186 PANTHER MADS BOX PROTEIN 3 155 - -
Mibi03g2120 186 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Mibi03g2120 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi03g2120 186 Coils Coil 82 109 - -
Mibi03g2120 186 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2120 Mibi-ChrMibi03 56955709 56956269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g2120 1 171 Type I MADS-box Gene Family AT2G34440 43.429 7.36e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi03g2120 SRF-TF 2.7e-24 No_clan