Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2104 ATGGGTGAGCTGAAGCAAAGTGTTCCAGTTCTGCCATGGATGCGGGACCCTGTGGATGTCACTCTATCTGAAGAATGCCCTCTTGAATGCGTTCCTTGTCTTCACCCCAAGTTGAAGTTAGCATTGCAGAATATGGGCATCTCTAGGCTCTTTCCTGTGCAAGTTGCAGTTTGGGAAGAGACTGTTGGGCCTGGTAATTTTGAGCGAGACCTTTGTATAAATTCTCCCACTGGAAGTGGAAAAACTTTAGCTTATGCCCTGCCAATTGTGCAAATGCTGTCAAACCGTGTTGTAAAATGCTTGCGAGCTTTAGTGGTGGTGCCCACCCGTGATCTTGCCTTTCAGGTCAAAGAAGTTTTTGACGCCATTGCATCTCCATTAGGATTACATGTTGGCTTGGCTGTTGGTCAATCTTCAATAGCTGATGAGATTTCTAAGCTTGTGGATATACCAGGATATGAGGTAGGAATGTGTTACGATCCAGAAGATGTATCTCTCAATTACCATCTTGGCTTCCAAAGTAAGGTGGATATTTTGGTAGCTACCCCTGGACGGCTCATGGACCATATTACCACTACTAAAGGGTTCACACTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGGCTTCTTCGGGAGGCCTACCAATCCTGGTTACCTGCTGTGTTGGAACTGACTCGATCTAAGGACAAGAATATTTATCCACCAGCTGGTTCATTTCTTCTTAATTCATATAGTGCATTAAGCACTAGGAGGAGATTTGGGGTTGAGAGGGGATTTAAAGATAAACCTTACCCCAGGTTGGCCAAGATGGTTCTATCTGCAACAATAACCCAGGACCCAGGAAAGCTTGTTCAACTTGATCTGCATCACCCAATATTCTTGAAAGCTGGGGAAATGCGTTATAGGCTTCCAGAAGATTTGGAATCACTGAAAGTGATATGCGAGACAACGGTCAAACCCTTGTACTTGGCTGCCCTTTTAAAAACATTTGGAGGAGAAAAATGCATAGTTTTTACACAATCTGTGGATTCAACACATCGTCTGTGCAAATTACTGAATTATTTCAGTGATCTTCAAATTAAGATCAAGCAATATTCTAGTCTTCAACCTCAACGTGTAAGAAGTAAGACATTGAAGGAATTTCGGAAAGGGGAGTTTCAGGTGCTTGTGTCTTCGGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTGAGAAACGTTGTTAATTATGACATGCCGAAATACATAAAAACTTATGTTCATCGAGCTGGTAGGACAGCAAGAGCTGGGCAGACTGGGCGATGCTTTACACTGATGTCCAAAGACGAGGCTAGACGATTTAAGAAGTTGTTGCAGAAGGCTGATAACAGTTCTTGCTGTGATCACACTCTGCCCTCTGGTCTGATTGAGGAACTTCACGCCACTTACCAGTCAGCTCTAAAAAAATTTAAAGAGACAGTTTCAGAAGCCCGAAAAAAGAAACCCAAGAGCAGTTCAGAGACTTCTCAAGCAAACAATGAAAAAGAGCGAGCAGGGTAA 1548 0.4322 MGELKQSVPVLPWMRDPVDVTLSEECPLECVPCLHPKLKLALQNMGISRLFPVQVAVWEETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSNRVVKCLRALVVVPTRDLAFQVKEVFDAIASPLGLHVGLAVGQSSIADEISKLVDIPGYEVGMCYDPEDVSLNYHLGFQSKVDILVATPGRLMDHITTTKGFTLEHLYYLVVDETDRLLREAYQSWLPAVLELTRSKDKNIYPPAGSFLLNSYSALSTRRRFGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLDLHHPIFLKAGEMRYRLPEDLESLKVICETTVKPLYLAALLKTFGGEKCIVFTQSVDSTHRLCKLLNYFSDLQIKIKQYSSLQPQRVRSKTLKEFRKGEFQVLVSSDAMTRGMDVEGVRNVVNYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEARRFKKLLQKADNSSCCDHTLPSGLIEELHATYQSALKKFKETVSEARKKKPKSSSETSQANNEKERAG 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2104 515 PANTHER RNA HELICASE 34 495 - -
Mibi03g2104 515 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 297 IPR014001 -
Mibi03g2104 515 SMART helicmild6 349 433 IPR001650 -
Mibi03g2104 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 455 IPR027417 -
Mibi03g2104 515 CDD SF2_C_DEAD 315 441 - -
Mibi03g2104 515 Gene3D - 314 514 IPR027417 -
Mibi03g2104 515 CDD DEADc_DDX51 38 294 - -
Mibi03g2104 515 Pfam DEAD/DEAH box helicase 52 285 IPR011545 GO:0003676|GO:0005524
Mibi03g2104 515 SMART ultradead3 46 316 IPR014001 -
Mibi03g2104 515 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 475 IPR001650 -
Mibi03g2104 515 MobiDBLite consensus disorder prediction 490 515 - -
Mibi03g2104 515 Gene3D - 23 300 IPR027417 -
Mibi03g2104 515 Pfam Helicase conserved C-terminal domain 322 433 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2104 Mibi-ChrMibi03 56702249 56709550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g2104 70 448 Eukaryotic Initiation Factors Gene Family AT3G13920 23.421 7.14e-26 108