Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2054 ATGGAAAGCATACCGCACCCAATACCCAGAACAGTGGAGGAGGTTTTCAGCGACTTTAAGGGAAGAAGAGCTGGATTGATTAAGGCCCTCACTACCGATGTTGAAAAGTTCTACCAGCAGTGCGATCCTGAGAAAGAGAACTTGTGTCTATATGGATTACCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTACCTGAGCCAGCATTAGGTATAAACTTTGCCAGGGATGGGATGCAAGAGAAGGATTGGTTGTCACTGGTTGCAGTTCACAGTGACTCATGGCTTCTTGCTGTGTCTTTCTATTTTGGTGCTCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTTCCAACCATATTTGAAGTTGTGACAGGGAGCGCCAAGCAATCAAAGGACCAGTCTGCTGCTCACAACAATGGTAGCAAAAGCAAGTCAAGTGGGAAGATGTCCTCCCAATCTGACTCTCAGGCCAAGGGAGTGAAGATGTCTCCTCCTCCTCCTCCCAAAGAAGAGGATGAAAGTGGAGAAGAAGAAGAAGAAGATGACGAACAAGGGGCAACGTGTGGAGCATGTGGTGATAATTATGGCACTGATGAGTTCTGGATCTGCTGCGATGTGTGCGAGAGATGGTTCCATGGCAAATGTGTGAAAATCACTCCTGCTAAGGCTGAACACATCAAGCAATATAAGTGCCCTAGCTGCAGTAACAAGAGGGCTAGAGTTTAG 768 0.4583 MESIPHPIPRTVEEVFSDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKQSKDQSAAHNNGSKSKSSGKMSSQSDSQAKGVKMSPPPPPKEEDESGEEEEEDDEQGATCGACGDNYGTDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2054 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Mibi03g2054 255 CDD PHD_AL_plant 202 251 IPR044104 -
Mibi03g2054 255 Pfam PHD-finger 202 251 IPR019787 -
Mibi03g2054 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Mibi03g2054 255 MobiDBLite consensus disorder prediction 141 173 - -
Mibi03g2054 255 MobiDBLite consensus disorder prediction 141 200 - -
Mibi03g2054 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Mibi03g2054 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Mibi03g2054 255 MobiDBLite consensus disorder prediction 185 200 - -
Mibi03g2054 255 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0006355|GO:0042393
Mibi03g2054 255 FunFam PHD finger alfin-like protein 194 250 - -
Mibi03g2054 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Mibi03g2054 255 SMART PHD_3 201 249 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2054 Mibi-ChrMibi03 55901655 55906230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g2054 1 252 Alfin-like Transcription Factor Family AT1G14510 81.746 5.21e-135 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mibi03g2054 Alfin 1.9e-69 No_clan