Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mibi03g2047 | ATGGACGAAACCCTAACCCCAGAAACCTCCGAAGCTCCTCTTCCTAATGCTGCTACTGCCTCTTTGGACGACGAGGAGAAAATCAACGGTGAAGATGAACCCATGAATGATGCAGCTGCTGATAACCCCAACGGTTCTGATTCTGATTCAGATTCTGACTCTGAATCTTCTGATTCTGATGATGAAGCTCAGCAGAATCTTCAGCTTCAAACCCTCGAGGCTGAGCTCGCTACTAACCCCTCTGACTATGATGCTCATGTTCAGTATATAAAACTTCTGAGGAAAATGGGGGACGTTGAAAAACTGAGGAGGGCAAGGGAAGCTATGAATGAACTGTTTCCGTTGAGCCCTGCAATGTGGCAGGAATGGACCAAAGATGAGGCTTCTCTCAATACTGGGCCTGAGGCGTATTCTACAATTCTGAAGCTTTATGACCGTGGGGTGTCTGAATATCTGTCTGTCTCTTTGTGGTGTGATTACATTAATTTTGTCCAAGAGTTTGATCCAATGGTGCGGCAATGTTCACCTGCTGGCATCACCAAAGCAAGGGAGTTGTTTGAGCGTGCTCTTACTGCAGCTGGTTTGCATGTTGCGGAAGGAAATAAAATATGGGAAGCATTTCGAGAATTTGAGCAGGCTATACTCCTTACCATTGATGAGACTGACATAGAGGCAAAAGATAAACAGGTTCAGAGAATCCGAAGTTTATTCCACCGGCAGTTGTCTGTTCCCCTTGCTGGTATGAATTCAACATTGATCACCTATAAGGCTTGGGAGGTTGAACAGGGTAAGCTTCATGATGTGGAGTCTAGTGACATAGCTGAGATTCATCCTCATGTTGCCTCTGCGTACCAGAAGGCTTTGGATATGTACAATGCTCGTGTTCATCTTGAGGAACATATTGCTAACAGCGCTTCTGACTCAGAAAAATTACAACAGTACATGAATTATGTGAAATTTGAACAGTCTTCTGGAACACCAGCCAGAGTCCTAGTTTTATATGAGCGAGCTGTTACAGACTTGCCAATAGCATCGGATCTCTGGCTTGATTATACTCGGTACTTGGACAGAACTTTAAAGGTTGGCAATATTGTAACCAGTGTTTATACCAGAGCCACTAAGAACTGTGCATGGCTTGGAGAGCTTTGGGTTCGATATCTGCTTTCATTGGAGCGTGGCCATGCATCTGAAAAAGAGATTGCAGCAGTCTTTGAGAAATCCCTGCTATGTTCCTTTTCAACTCTTGATGAGTATCTTGATTTATTTCTCACTCGAGTGGATGGCCTAAGGCGGAGAATGGCATCTACTTGTGAAGAGGGCCTTTTGGAATATGAAACTATAAGGCAGACCTTCCAGCGTGCCTCAGATTACCTGTCACCACAAATGAAGAATACAGAGAGTTTGGTGCAGTTACATGCTTATTGGGCCCATTTAGAAGCTAAACTTGGAAAAGATATAACTGCAGCTCGTGGAATCTGGGAGAGTCTCGTCAAGATATGTGGTTCAATGTTAGAGGCGTGGAAAGGGTATATAGCAATGGAAATTGAACATGGTCACATAAATGAAGCTAGGTCCATATACAAGAGATGCTACAGTAAGAGGTTTCCTGGGACTGGTTCAGAGGACATATGCCATTCATGGTTACGTTTTGAGAGGGAGTTTGGCACCTTGGAGGATTATGATCATGCCTTACAAAAGGTTAGCCCTCGTCTGGAAGAGTTACAACTATATAGGATACATCAAGAATCAAAGTCAACAGAGGAGAAAGAACAGCATCCTAAAAGAAATGTCCGTGACAAGAGAAAGTTGGAATCTGACATAACAGATGAGCAGTCTCCGGCAAAGCGACGGAAAGAAATTGGCAAGAACCCGAAGAAAGTTCATGAGGAAAATCAAGGTCAAAAGAACATTACTCAGGCGGCAAAAGTGGTGGAGGCAAATGAGGAGATTAACAAATCTGAAGTTGTAACTAAACAACCGTCTACCTCTGACAAAAGCAGGGCCTTTTCTGATCAGTGCACCATCTTTATGTCAAACTTGGACCTTACGGTGAATTATGAGCATATCCGTAATTTCTTCAGCGATGTTGGTGGCATTGTTGCCATTCGTATTCTTCGTGACAAGTTTTCTGGAAAATCAAGGGGACTGGCCTATGTGGATTTTTCGGATGAAGAGCATCTTTCTGCTGCAGTAGCCAAGAACAAGCAAAGATTACTTGGGAAGAAGCTAAGTATTGCTCGGTCTGATCCAAGTCGAGGTAGAAAGGAATCTTCTGGTCAGAGTCAGAGAAACTTCAAAGAACAAAGACGCACTGATCAATCCGGTCAAGTAGGTTCTGCTGACAGAGAATCTGATGATGTCTCAAAGGAAGCTGTAAAGGAATCCAGGTCTGCAAATAGAAAGCCTGGAGGTGACAACATCCAGATCAAAGGAAAGAACACATTTGCGGTGCCCAGAAATGTTAGGGCACTTGGCTGGAGTTCGAATAAGCCGAAGATCGAAGAGGATGAAACGCCCAAATCCAATGATGAATTTAGAAAGATGTTCATTAAAAAAGAATAG | 2562 | 0.4352 | MDETLTPETSEAPLPNAATASLDDEEKINGEDEPMNDAAADNPNGSDSDSDSDSESSDSDDEAQQNLQLQTLEAELATNPSDYDAHVQYIKLLRKMGDVEKLRRAREAMNELFPLSPAMWQEWTKDEASLNTGPEAYSTILKLYDRGVSEYLSVSLWCDYINFVQEFDPMVRQCSPAGITKARELFERALTAAGLHVAEGNKIWEAFREFEQAILLTIDETDIEAKDKQVQRIRSLFHRQLSVPLAGMNSTLITYKAWEVEQGKLHDVESSDIAEIHPHVASAYQKALDMYNARVHLEEHIANSASDSEKLQQYMNYVKFEQSSGTPARVLVLYERAVTDLPIASDLWLDYTRYLDRTLKVGNIVTSVYTRATKNCAWLGELWVRYLLSLERGHASEKEIAAVFEKSLLCSFSTLDEYLDLFLTRVDGLRRRMASTCEEGLLEYETIRQTFQRASDYLSPQMKNTESLVQLHAYWAHLEAKLGKDITAARGIWESLVKICGSMLEAWKGYIAMEIEHGHINEARSIYKRCYSKRFPGTGSEDICHSWLRFEREFGTLEDYDHALQKVSPRLEELQLYRIHQESKSTEEKEQHPKRNVRDKRKLESDITDEQSPAKRRKEIGKNPKKVHEENQGQKNITQAAKVVEANEEINKSEVVTKQPSTSDKSRAFSDQCTIFMSNLDLTVNYEHIRNFFSDVGGIVAIRILRDKFSGKSRGLAYVDFSDEEHLSAAVAKNKQRLLGKKLSIARSDPSRGRKESSGQSQRNFKEQRRTDQSGQVGSADRESDDVSKEAVKESRSANRKPGGDNIQIKGKNTFAVPRNVRALGWSSNKPKIEEDETPKSNDEFRKMFIKKE | 853 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mibi03g2047 | 853 | MobiDBLite | consensus disorder prediction | 582 | 637 | - | - | |
Mibi03g2047 | 853 | SMART | rrm1_1 | 674 | 746 | IPR000504 | GO:0003723 | |
Mibi03g2047 | 853 | MobiDBLite | consensus disorder prediction | 747 | 770 | - | - | |
Mibi03g2047 | 853 | MobiDBLite | consensus disorder prediction | 582 | 632 | - | - | |
Mibi03g2047 | 853 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Mibi03g2047 | 853 | Gene3D | - | 641 | 785 | IPR012677 | - | |
Mibi03g2047 | 853 | Pfam | Lsm interaction motif | 836 | 851 | IPR008669 | - | |
Mibi03g2047 | 853 | SMART | hat_new_1 | 518 | 553 | IPR003107 | GO:0006396 | |
Mibi03g2047 | 853 | SMART | hat_new_1 | 177 | 213 | IPR003107 | GO:0006396 | |
Mibi03g2047 | 853 | SMART | hat_new_1 | 484 | 516 | IPR003107 | GO:0006396 | |
Mibi03g2047 | 853 | SMART | hat_new_1 | 97 | 129 | IPR003107 | GO:0006396 | |
Mibi03g2047 | 853 | SMART | hat_new_1 | 135 | 166 | IPR003107 | GO:0006396 | |
Mibi03g2047 | 853 | SMART | hat_new_1 | 325 | 357 | IPR003107 | GO:0006396 | |
Mibi03g2047 | 853 | SMART | hat_new_1 | 360 | 392 | IPR003107 | GO:0006396 | |
Mibi03g2047 | 853 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 675 | 743 | IPR000504 | GO:0003723 | |
Mibi03g2047 | 853 | SUPERFAMILY | TPR-like | 73 | 568 | IPR011990 | GO:0005515 | |
Mibi03g2047 | 853 | SUPERFAMILY | RNA-binding domain, RBD | 660 | 775 | IPR035979 | GO:0003676 | |
Mibi03g2047 | 853 | PANTHER | PRE-MRNA PROCESSING PROTEIN PRP39-RELATED | 47 | 766 | - | - | |
Mibi03g2047 | 853 | Gene3D | Tetratricopeptide repeat domain | 72 | 270 | IPR011990 | GO:0005515 | |
Mibi03g2047 | 853 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 673 | 750 | IPR000504 | GO:0003723 | |
Mibi03g2047 | 853 | MobiDBLite | consensus disorder prediction | 782 | 800 | - | - | |
Mibi03g2047 | 853 | MobiDBLite | consensus disorder prediction | 741 | 815 | - | - | |
Mibi03g2047 | 853 | Gene3D | Tetratricopeptide repeat domain | 305 | 593 | IPR011990 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mibi03g2047 | Mibi-ChrMibi03 | 55815566 | 55822934 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mibi03g2047 | 653 | 767 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 27.500 | 2.56e-06 | 49.3 |