Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2047 ATGGACGAAACCCTAACCCCAGAAACCTCCGAAGCTCCTCTTCCTAATGCTGCTACTGCCTCTTTGGACGACGAGGAGAAAATCAACGGTGAAGATGAACCCATGAATGATGCAGCTGCTGATAACCCCAACGGTTCTGATTCTGATTCAGATTCTGACTCTGAATCTTCTGATTCTGATGATGAAGCTCAGCAGAATCTTCAGCTTCAAACCCTCGAGGCTGAGCTCGCTACTAACCCCTCTGACTATGATGCTCATGTTCAGTATATAAAACTTCTGAGGAAAATGGGGGACGTTGAAAAACTGAGGAGGGCAAGGGAAGCTATGAATGAACTGTTTCCGTTGAGCCCTGCAATGTGGCAGGAATGGACCAAAGATGAGGCTTCTCTCAATACTGGGCCTGAGGCGTATTCTACAATTCTGAAGCTTTATGACCGTGGGGTGTCTGAATATCTGTCTGTCTCTTTGTGGTGTGATTACATTAATTTTGTCCAAGAGTTTGATCCAATGGTGCGGCAATGTTCACCTGCTGGCATCACCAAAGCAAGGGAGTTGTTTGAGCGTGCTCTTACTGCAGCTGGTTTGCATGTTGCGGAAGGAAATAAAATATGGGAAGCATTTCGAGAATTTGAGCAGGCTATACTCCTTACCATTGATGAGACTGACATAGAGGCAAAAGATAAACAGGTTCAGAGAATCCGAAGTTTATTCCACCGGCAGTTGTCTGTTCCCCTTGCTGGTATGAATTCAACATTGATCACCTATAAGGCTTGGGAGGTTGAACAGGGTAAGCTTCATGATGTGGAGTCTAGTGACATAGCTGAGATTCATCCTCATGTTGCCTCTGCGTACCAGAAGGCTTTGGATATGTACAATGCTCGTGTTCATCTTGAGGAACATATTGCTAACAGCGCTTCTGACTCAGAAAAATTACAACAGTACATGAATTATGTGAAATTTGAACAGTCTTCTGGAACACCAGCCAGAGTCCTAGTTTTATATGAGCGAGCTGTTACAGACTTGCCAATAGCATCGGATCTCTGGCTTGATTATACTCGGTACTTGGACAGAACTTTAAAGGTTGGCAATATTGTAACCAGTGTTTATACCAGAGCCACTAAGAACTGTGCATGGCTTGGAGAGCTTTGGGTTCGATATCTGCTTTCATTGGAGCGTGGCCATGCATCTGAAAAAGAGATTGCAGCAGTCTTTGAGAAATCCCTGCTATGTTCCTTTTCAACTCTTGATGAGTATCTTGATTTATTTCTCACTCGAGTGGATGGCCTAAGGCGGAGAATGGCATCTACTTGTGAAGAGGGCCTTTTGGAATATGAAACTATAAGGCAGACCTTCCAGCGTGCCTCAGATTACCTGTCACCACAAATGAAGAATACAGAGAGTTTGGTGCAGTTACATGCTTATTGGGCCCATTTAGAAGCTAAACTTGGAAAAGATATAACTGCAGCTCGTGGAATCTGGGAGAGTCTCGTCAAGATATGTGGTTCAATGTTAGAGGCGTGGAAAGGGTATATAGCAATGGAAATTGAACATGGTCACATAAATGAAGCTAGGTCCATATACAAGAGATGCTACAGTAAGAGGTTTCCTGGGACTGGTTCAGAGGACATATGCCATTCATGGTTACGTTTTGAGAGGGAGTTTGGCACCTTGGAGGATTATGATCATGCCTTACAAAAGGTTAGCCCTCGTCTGGAAGAGTTACAACTATATAGGATACATCAAGAATCAAAGTCAACAGAGGAGAAAGAACAGCATCCTAAAAGAAATGTCCGTGACAAGAGAAAGTTGGAATCTGACATAACAGATGAGCAGTCTCCGGCAAAGCGACGGAAAGAAATTGGCAAGAACCCGAAGAAAGTTCATGAGGAAAATCAAGGTCAAAAGAACATTACTCAGGCGGCAAAAGTGGTGGAGGCAAATGAGGAGATTAACAAATCTGAAGTTGTAACTAAACAACCGTCTACCTCTGACAAAAGCAGGGCCTTTTCTGATCAGTGCACCATCTTTATGTCAAACTTGGACCTTACGGTGAATTATGAGCATATCCGTAATTTCTTCAGCGATGTTGGTGGCATTGTTGCCATTCGTATTCTTCGTGACAAGTTTTCTGGAAAATCAAGGGGACTGGCCTATGTGGATTTTTCGGATGAAGAGCATCTTTCTGCTGCAGTAGCCAAGAACAAGCAAAGATTACTTGGGAAGAAGCTAAGTATTGCTCGGTCTGATCCAAGTCGAGGTAGAAAGGAATCTTCTGGTCAGAGTCAGAGAAACTTCAAAGAACAAAGACGCACTGATCAATCCGGTCAAGTAGGTTCTGCTGACAGAGAATCTGATGATGTCTCAAAGGAAGCTGTAAAGGAATCCAGGTCTGCAAATAGAAAGCCTGGAGGTGACAACATCCAGATCAAAGGAAAGAACACATTTGCGGTGCCCAGAAATGTTAGGGCACTTGGCTGGAGTTCGAATAAGCCGAAGATCGAAGAGGATGAAACGCCCAAATCCAATGATGAATTTAGAAAGATGTTCATTAAAAAAGAATAG 2562 0.4352 MDETLTPETSEAPLPNAATASLDDEEKINGEDEPMNDAAADNPNGSDSDSDSDSESSDSDDEAQQNLQLQTLEAELATNPSDYDAHVQYIKLLRKMGDVEKLRRAREAMNELFPLSPAMWQEWTKDEASLNTGPEAYSTILKLYDRGVSEYLSVSLWCDYINFVQEFDPMVRQCSPAGITKARELFERALTAAGLHVAEGNKIWEAFREFEQAILLTIDETDIEAKDKQVQRIRSLFHRQLSVPLAGMNSTLITYKAWEVEQGKLHDVESSDIAEIHPHVASAYQKALDMYNARVHLEEHIANSASDSEKLQQYMNYVKFEQSSGTPARVLVLYERAVTDLPIASDLWLDYTRYLDRTLKVGNIVTSVYTRATKNCAWLGELWVRYLLSLERGHASEKEIAAVFEKSLLCSFSTLDEYLDLFLTRVDGLRRRMASTCEEGLLEYETIRQTFQRASDYLSPQMKNTESLVQLHAYWAHLEAKLGKDITAARGIWESLVKICGSMLEAWKGYIAMEIEHGHINEARSIYKRCYSKRFPGTGSEDICHSWLRFEREFGTLEDYDHALQKVSPRLEELQLYRIHQESKSTEEKEQHPKRNVRDKRKLESDITDEQSPAKRRKEIGKNPKKVHEENQGQKNITQAAKVVEANEEINKSEVVTKQPSTSDKSRAFSDQCTIFMSNLDLTVNYEHIRNFFSDVGGIVAIRILRDKFSGKSRGLAYVDFSDEEHLSAAVAKNKQRLLGKKLSIARSDPSRGRKESSGQSQRNFKEQRRTDQSGQVGSADRESDDVSKEAVKESRSANRKPGGDNIQIKGKNTFAVPRNVRALGWSSNKPKIEEDETPKSNDEFRKMFIKKE 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2047 853 MobiDBLite consensus disorder prediction 582 637 - -
Mibi03g2047 853 SMART rrm1_1 674 746 IPR000504 GO:0003723
Mibi03g2047 853 MobiDBLite consensus disorder prediction 747 770 - -
Mibi03g2047 853 MobiDBLite consensus disorder prediction 582 632 - -
Mibi03g2047 853 MobiDBLite consensus disorder prediction 1 65 - -
Mibi03g2047 853 Gene3D - 641 785 IPR012677 -
Mibi03g2047 853 Pfam Lsm interaction motif 836 851 IPR008669 -
Mibi03g2047 853 SMART hat_new_1 518 553 IPR003107 GO:0006396
Mibi03g2047 853 SMART hat_new_1 177 213 IPR003107 GO:0006396
Mibi03g2047 853 SMART hat_new_1 484 516 IPR003107 GO:0006396
Mibi03g2047 853 SMART hat_new_1 97 129 IPR003107 GO:0006396
Mibi03g2047 853 SMART hat_new_1 135 166 IPR003107 GO:0006396
Mibi03g2047 853 SMART hat_new_1 325 357 IPR003107 GO:0006396
Mibi03g2047 853 SMART hat_new_1 360 392 IPR003107 GO:0006396
Mibi03g2047 853 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 675 743 IPR000504 GO:0003723
Mibi03g2047 853 SUPERFAMILY TPR-like 73 568 IPR011990 GO:0005515
Mibi03g2047 853 SUPERFAMILY RNA-binding domain, RBD 660 775 IPR035979 GO:0003676
Mibi03g2047 853 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 47 766 - -
Mibi03g2047 853 Gene3D Tetratricopeptide repeat domain 72 270 IPR011990 GO:0005515
Mibi03g2047 853 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 673 750 IPR000504 GO:0003723
Mibi03g2047 853 MobiDBLite consensus disorder prediction 782 800 - -
Mibi03g2047 853 MobiDBLite consensus disorder prediction 741 815 - -
Mibi03g2047 853 Gene3D Tetratricopeptide repeat domain 305 593 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2047 Mibi-ChrMibi03 55815566 55822934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g2047 653 767 Eukaryotic Initiation Factors Gene Family AT4G34110 27.500 2.56e-06 49.3