Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g2035 ATGGCTTTAAATCAGACACCTGGTGGAAACCAACCAGCAGGGCCGACAAATGATGCCTTGTACAAGGAATTGTGGCATGCCTGTGCTGGTCCCCTTGTCACTCTTCCCCGTGAAGGAGAACGTGTTTATTACTTTCCTCAGGGGCATATGGAGCAGCTTGAGGCGTCTATGCATCAAGGAGCAGAGCAACAAATGCCTTCCTTCAACCTGCCATCTAAAATTTTATGCAAAGTGGTCAATGTTCATCTTCGGGCTGAACCTGATACAGATGAAGTATATGCACAGATAACTTTGCTTCCAGATGCAGATCAAAGCGAGTTAAATAGTCCAGATGATCCTCTGCCAGAGCCTGCTAGATGCACTGTCCATTCATTTTGTAAAACACTCACTGCATCTGACACCAGCACCCATGGGGGATTTTCTGTTCTTAGGAGACATGCAGATGAATGTTTGCCACCCTTGGACATGTCTCAGCAGCCACCATGGCAAGAGTTGGTTGCAACTGATTTGCATGGAAATGAATGGCATTTTAGACATATTTTCCGAGGGCAACCTAGGCGCCACTTGCTGACTACTGGGTGGAGTGTCTTTGTTAGTTCCAAGAAATTGGTGGCTGGTGATGCGTTTATATTCCTGAGAGGTGAAAATGGGGAGTTGCGTGTTGGAGTTAGGAGGCTGATGAGACAGCAAAATAACATGCCATCATCTGTCATATCAAGTCATAGTATGCATCTGGGCGTTTTGGCCACTGCATCTCATGCAATTGCCACTGGAACTCTGTTTTCTGTATTCTACAAGCCCAGAACAAGCCGATCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTAAGAGTCACAAGTTTTCCGTTGGGATGAGATTCAAGATGAGGTTTGAAGGTGATGAAGTTCCTGAAAGGAGGTTTAGCGGTACAATTGTTGGGGTTGGAGATAATATCTCACCTGTCTGGGCTGATTCTGAGTGGCGCTCATTAAAGGTTCAATGGGATGAACCCTCTTCAATCTTGCGACCTGATAGAGTTTCTCCTTGGGAATTGGAGCCACTTGTGAATACCACCACTCCTGCAAATCCCCAACCAACCCAGAGAAACAAGAGGGCACGACCTCCCCTGCTACCATCAGCAGTGCCGGATTCCTTGCATGGTGTCTGGAAATCAGTTAATAAATCTCCGCAGTTCTCTTTTGGTGATCCGCAACATGCACGAGACCAATATTCAGGATCCAAGTTCAATCCTTCTGCTGCCAACTTTCTCGGTATTGGTGCTAATAGTCCTATGGGGTCTGGTTCTAATAATGCAACCTATTGGTCCAATAGAGTGGAGAACTCTTTGGAGTCGATAACCCCTAAAGAATCCAGTGAAAAGAGACAAGGTGCTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGTAGAAGAAAATATGCTGCCAGTCACATTGTCAGGAAGGGTTGGAGATGATAAGTCTGGTCCATATGTTGATGCTGAGTCTGATCAGCATTCTGAACCATCAAATGTTAATCGTGCTGATGGTCCTTCAGCAAGTTGTGATGCTGAAAAATCATGCCTGCAGTCTCCCCCTGAAGCACTAAGCAAGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGGATGGCAGTTGGAAGGGCTGTGGATTTGACTCGGTTTGATGGATATGAAGATCTGCTTAAGAAATTGGAGGAGATGTTTGACATCAAGGGTGAGCTATGTGGATCCAATAAAAATTGGCTTGTTGTCTACACCGATAATGAAGATGATGTGATGATGGTTGGGGACATTCCATGGAATGAGTTCTGTAGTGCTGTGAGGAAAATTTTCATTTACACCGCAGAGGAGGTGAAGAAGCTTTCACCCAAAGCTCTACTTTCATTTGGTGAAGAAGCTAAAACAGGCAAGCCAGACTCTGAAGCAGCAGTTAATGCTGAAGACCAAGATCAGTCATCTATTGTGGGGCCTGGTTGTTAA 2022 0.4515 MALNQTPGGNQPAGPTNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGAEQQMPSFNLPSKILCKVVNVHLRAEPDTDEVYAQITLLPDADQSELNSPDDPLPEPARCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAKSHKFSVGMRFKMRFEGDEVPERRFSGTIVGVGDNISPVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVNTTTPANPQPTQRNKRARPPLLPSAVPDSLHGVWKSVNKSPQFSFGDPQHARDQYSGSKFNPSAANFLGIGANSPMGSGSNNATYWSNRVENSLESITPKESSEKRQGAGNGCRLFGIQLLENSNVEENMLPVTLSGRVGDDKSGPYVDAESDQHSEPSNVNRADGPSASCDAEKSCLQSPPEALSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLKKLEEMFDIKGELCGSNKNWLVVYTDNEDDVMMVGDIPWNEFCSAVRKIFIYTAEEVKKLSPKALLSFGEEAKTGKPDSEAAVNAEDQDQSSIVGPGC 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g2035 673 Pfam Auxin response factor 251 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mibi03g2035 673 SUPERFAMILY DNA-binding pseudobarrel domain 114 254 IPR015300 -
Mibi03g2035 673 SUPERFAMILY CAD & PB1 domains 549 624 - -
Mibi03g2035 673 Gene3D - 542 636 - -
Mibi03g2035 673 MobiDBLite consensus disorder prediction 357 382 - -
Mibi03g2035 673 MobiDBLite consensus disorder prediction 646 673 - -
Mibi03g2035 673 MobiDBLite consensus disorder prediction 492 532 - -
Mibi03g2035 673 Gene3D - 288 361 - -
Mibi03g2035 673 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Mibi03g2035 673 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 636 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mibi03g2035 673 FunFam Auxin response factor 288 360 - -
Mibi03g2035 673 ProSiteProfiles PB1 domain profile. 547 640 IPR000270 GO:0005515
Mibi03g2035 673 Pfam AUX/IAA family 545 637 IPR033389 -
Mibi03g2035 673 SMART B3_2 125 227 IPR003340 GO:0003677
Mibi03g2035 673 CDD B3_DNA 123 225 IPR003340 GO:0003677
Mibi03g2035 673 MobiDBLite consensus disorder prediction 357 371 - -
Mibi03g2035 673 FunFam Auxin response factor 542 636 - -
Mibi03g2035 673 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Mibi03g2035 673 Gene3D - 122 227 IPR015300 -
Mibi03g2035 673 FunFam Auxin response factor 123 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g2035 Mibi-ChrMibi03 55646863 55652407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g2035 2 666 B3 DNA Binding Superfamily AT1G59750 69.104 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mibi03g2035 AUX_IAA 4.2e-14 CL0072