Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1994 ATGGGCTGCATATGTTTTAGAGGGACACATCCATGCGATTATGTCCCGAAAACGAAGAAATCCTCAAATGGAAGGAGGGATAAAAAACATGCAATGCAAGAAGAATGGGATGTATCAAACGATAATGTAATTACAAGGTTGATATCATCATATGAGAGGGACAAAAATGTTGTGGGAACAAGTGGGAATTCTCAAATCACAAATGTCGAAGAAGGACAAAGTAGGAAGATGGTATTGAATAGGATAGGTAGTTTGAAAAGAGGAGAGAGAGGAGCTCAAGTTCTTGCTGGTTGGCCTTCATGGCTATCTGCCGTTGCAGGTGAAGCCATTAGTGGTTGGATTCCACGTAGATCAGAATCGTTTGAGAGGTTAGAGAAGATTGGACAAGGGACATATAGCAGTGTTTACAAAGCTAGAGATTTGGAAACAAATAAAATAGTTGCGTTAAAGAAGGTTCGATTTGCTAATATGGACCCAGAAAGTGTTCGTTTTATGGCCAGAGAAATCATTATACTAAGAAGGCTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATCACCTCAAGAGTTTCTGGCAGCTTGTACCTTATTTTTGAATACATGGAACATGATCTCACTGGCCTTTTGGCTCTTACTGGCGTCAAGTTTTCTGAAGAACAGATAAAGTGCTATATGCAGCAACTATTGAGAGGATTAGAGCATTGTCACAAGAAGGGGGTGCTACACAGAGACATAAAAGGAGCGAATTTGTTAATAGACTATAAGGGCAATTTAAAAATTGCAGATTTTGGTCTAGCCACTGTGTTGAATGGCCAAACATTAACAAGTAGAGTTGTCACCTTGTGGTACAGATCACCTGAACTCTTACTAGGAGCCACCACTTACGGCGGTGCCGTTGACTTGTGGAGTGCTGGTTGTATTCTCGCAGAACTCTTTGTCGGAAGGCCCATCATGCCCGGTCGAACCGAGGTGGAGCAACTGCATAAGATATTTAAACTGTGTGGATCACCTTCGGAGAAGTATTGGAAGAAGTCGAGGCTACCACATGCCACCATTTTCAAACCTCAACACCCTTACAAGCGAATTGTTGCAGAGACATTCAAAGATTTCCCATCCTCTGCCCTAAAACTTCTCGACGTGCTTCTTGCCATAGAACCTGATGATCGAGGAACTGCTTCCTCAGCACTTCAGTCCGAGTTCTTCACGACACAGCCACTTCCATGTGAGCCATCAAATTTGCCAAGATATCCAGCAAGTAAGGAGTTTGATGTGAAGTTTCGAGAAGATAAAGCTAGAAGAAAAATAGGGTCAACGAGGAAAGGAAATGAACAAGAACTCGTCAAGAGTTTTGTTAATTCTAAAGCTCTTGCCTCACCACCAGATACAAAGTCCCAACTTTCAGCAGCTACAGAGAATCGAGGAGAGCCAATTTTAAAGCGAAGACTAGATAAGAATAGTTTGTTGGTTGAACCGGCAAGCATAAGAGGACCAAAAGTATTGTGTCATTCAAGCCAATCCACAGTTCAGAGTGCCTACATGGAACTCATGAAGCATGAAGTTGCCGGTGGAGGAGAACGTGAGGTGTTTTTTGCAACTAGGAGGAAGCAAGAAGCCACACATTGGAATGCGACTAACGCCGCTCGTCTCTCCAAGTTCTCCAACTCCGTCGCCGCAGGTGACGGCTCCCGGCTCGCGGTGATCGGAGGCGGCGGAGGTGACTCCTCCATGTGGGGAGACAATGGCTTCGGCCAAAGAAATAGACATGCGGCCATTAGAGAATCCGACCTCTTTCTGCCTTCATTTAACAAGTCTCGTCTCAACAAATCTCTTGTCAAGGAATATGGAAGGAAAAGTGGGAAGATGCAATATTCAGGACCTCCTTTGGTGTCTGCAACAGAAAAGCAGCTTGAAGAAATGGTGAAGCAACATGAACAACAAATCCAACATATCTTACGTAAAGGTGGTTTCGATCATCATAAGCTCAAGACTTAG 1995 0.4371 MGCICFRGTHPCDYVPKTKKSSNGRRDKKHAMQEEWDVSNDNVITRLISSYERDKNVVGTSGNSQITNVEEGQSRKMVLNRIGSLKRGERGAQVLAGWPSWLSAVAGEAISGWIPRRSESFERLEKIGQGTYSSVYKARDLETNKIVALKKVRFANMDPESVRFMAREIIILRRLDHPNVMKLEGMITSRVSGSLYLIFEYMEHDLTGLLALTGVKFSEEQIKCYMQQLLRGLEHCHKKGVLHRDIKGANLLIDYKGNLKIADFGLATVLNGQTLTSRVVTLWYRSPELLLGATTYGGAVDLWSAGCILAELFVGRPIMPGRTEVEQLHKIFKLCGSPSEKYWKKSRLPHATIFKPQHPYKRIVAETFKDFPSSALKLLDVLLAIEPDDRGTASSALQSEFFTTQPLPCEPSNLPRYPASKEFDVKFREDKARRKIGSTRKGNEQELVKSFVNSKALASPPDTKSQLSAATENRGEPILKRRLDKNSLLVEPASIRGPKVLCHSSQSTVQSAYMELMKHEVAGGGEREVFFATRRKQEATHWNATNAARLSKFSNSVAAGDGSRLAVIGGGGGDSSMWGDNGFGQRNRHAAIRESDLFLPSFNKSRLNKSLVKEYGRKSGKMQYSGPPLVSATEKQLEEMVKQHEQQIQHILRKGGFDHHKLKT 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1994 664 MobiDBLite consensus disorder prediction 455 472 - -
Mibi03g1994 664 SMART serkin_6 121 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g1994 664 CDD STKc_CDK9_like 121 402 - -
Mibi03g1994 664 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Mibi03g1994 664 MobiDBLite consensus disorder prediction 455 475 - -
Mibi03g1994 664 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Mibi03g1994 664 FunFam probable serine/threonine-protein kinase At1g54610 204 442 - -
Mibi03g1994 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Mibi03g1994 664 SUPERFAMILY Protein kinase-like (PK-like) 116 409 IPR011009 -
Mibi03g1994 664 PANTHER CELL DIVISION PROTEIN KINASE 119 408 - -
Mibi03g1994 664 Gene3D Transferase(Phosphotransferase) domain 1 204 441 - -
Mibi03g1994 664 ProSiteProfiles Protein kinase domain profile. 121 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g1994 664 Pfam Protein kinase domain 121 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g1994 664 Coils Coil 634 654 - -
Mibi03g1994 664 FunFam probable serine/threonine-protein kinase At1g54610 108 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1994 Mibi-ChrMibi03 54963540 54973212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1994 113 434 Core Cell Cycle Gene Families AT5G10270 50.733 3.02e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Mibi03g1994 Pkinase 1.6e-71 CL0016