Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1958 ATGGATTCTCAAGCTTTCTCCATGGTCTTGTTTTCTTTCTGTCGACCCTTCTCTCTCTCTCTCTGCGTCCATTCTGCCCAAATTCGTTACCTTAACCCTAACCCTAACCCTAATTGTATTTTCAGAGATTTGATTACTGTCTATTCGCATCAGGATCAGGGCTTTGAAGAGAGCAGTAAAGTGAGAGAGATGGAGACACAGTTCAGTCACTCTCTCTTCGACCGTCACCCCATCATCAAGTCTAAGTCTCCCGCCGTTAAATGGGTTAGAGAATGGGTTCCCCAGGATGTTGTGGCCACTGGTGGGAAGTGCATGCTTTTCAGATGGGTAAGAGAGGATTCATTAAAGTCCTTGAAGGATAAGGAAAAGGAACCATCGGTGCCTGAGCCAGAACCTGAGCCAACTACTGAAGTACTTTTTCTATGTAGCTATGAAGGCTGTGGGAAAACTTTTATAGATGCTGGTGCTTTGAGAAAGCATTCTCACATCCATGGAGAAAGGCAGTACGCTTGTCACTATGCGGGTTGTGGAAAGAAATTTCTGGATAGTTCAAAGCTGAAAAGACATTTTCTCATCCATACAGGGGAAAGGGCTTATGTATGTCCTATTGAAGGCTGTGGTAAGGCCTTCTCCCTCGATTTCAACCTAAAGTCTCACATGAAAACACATTCACATGAGAACTACCATGTCTGCAAATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAAAATCACATTGCAACACACCATGAAAAGAATGGATCTGTGGATCTGAATGTAACAAAGTATAATACACCACCTGCAGAGAAGCCGGCAAAAGCAACAAAACCTTCGGGGGGTGCTTATGCTTCTGCGTCATCTGATCGTCCTTTTGTTTGTCCTTATGAAGGGTGTGACAAGGCCTATATCCATGAATATAAACTTAAACTCCATTTGAAAAGGGAGCATCCTGGGCATGATGAAATCGCTGCAGAGAATGCTCAGGCTAATAATAACAATGCTGACAATGAAATGGATGAAGCAAGCGATCAAGATGCCTATGGTGGGAAACGATCAAATGGTCGAATTCAGAAACAGAGTAAGCCCAAACCAAACTTGAAGTTGCCTCCATCGAAAGTTGCACGGCGCAAAGCATCATCAACACCCTCTACTGTGACACCCCCTATGAAGGCAATTAAGAAACCTTGGCCAGTGAAAGAAGAAAACTTTGAGGAAGAAGATAGTGAAGAAACAGAGGAGGATAGGGATAACGTTGAAGATGGTTGGAGATATACAGGTAACAACGAGGATGATGATGAGGAAACAGAATATGAAGACTGA 1332 0.4324 MDSQAFSMVLFSFCRPFSLSLCVHSAQIRYLNPNPNPNCIFRDLITVYSHQDQGFEESSKVREMETQFSHSLFDRHPIIKSKSPAVKWVREWVPQDVVATGGKCMLFRWVREDSLKSLKDKEKEPSVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYACHYAGCGKKFLDSSKLKRHFLIHTGERAYVCPIEGCGKAFSLDFNLKSHMKTHSHENYHVCKYPDCGKRYAHEYKLKNHIATHHEKNGSVDLNVTKYNTPPAEKPAKATKPSGGAYASASSDRPFVCPYEGCDKAYIHEYKLKLHLKREHPGHDEIAAENAQANNNNADNEMDEASDQDAYGGKRSNGRIQKQSKPKPNLKLPPSKVARRKASSTPSTVTPPMKAIKKPWPVKEENFEEEDSEETEEDRDNVEDGWRYTGNNEDDDEETEYED 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1958 443 FunFam Putative zinc finger protein 143 166 196 - -
Mibi03g1958 443 Gene3D Classic Zinc Finger 140 165 - -
Mibi03g1958 443 MobiDBLite consensus disorder prediction 406 420 - -
Mibi03g1958 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 199 228 IPR013087 -
Mibi03g1958 443 MobiDBLite consensus disorder prediction 269 291 - -
Mibi03g1958 443 SUPERFAMILY beta-beta-alpha zinc fingers 143 193 IPR036236 -
Mibi03g1958 443 Gene3D Classic Zinc Finger 166 196 - -
Mibi03g1958 443 Gene3D Classic Zinc Finger 228 258 - -
Mibi03g1958 443 Gene3D Classic Zinc Finger 197 227 - -
Mibi03g1958 443 FunFam zinc finger transcription factor YY1 140 165 - -
Mibi03g1958 443 ProSitePatterns Zinc finger C2H2 type domain signature. 201 225 IPR013087 -
Mibi03g1958 443 FunFam Zinc finger transcription factor YY1 270 339 - -
Mibi03g1958 443 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 68 418 - -
Mibi03g1958 443 Pfam Zinc finger, C2H2 type 295 320 IPR013087 -
Mibi03g1958 443 Pfam Zinc finger, C2H2 type 229 253 IPR013087 -
Mibi03g1958 443 Pfam Zinc finger, C2H2 type 199 223 IPR013087 -
Mibi03g1958 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 198 IPR013087 -
Mibi03g1958 443 FunFam Zinc finger protein 410 197 224 - -
Mibi03g1958 443 Coils Coil 328 348 - -
Mibi03g1958 443 SMART c2h2final6 229 253 IPR013087 -
Mibi03g1958 443 SMART c2h2final6 140 164 IPR013087 -
Mibi03g1958 443 SMART c2h2final6 295 320 IPR013087 -
Mibi03g1958 443 SMART c2h2final6 199 223 IPR013087 -
Mibi03g1958 443 SMART c2h2final6 169 193 IPR013087 -
Mibi03g1958 443 Gene3D Classic Zinc Finger 269 340 - -
Mibi03g1958 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 169 IPR013087 -
Mibi03g1958 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 258 IPR013087 -
Mibi03g1958 443 FunFam zinc finger transcription factor YY1 226 257 - -
Mibi03g1958 443 SUPERFAMILY beta-beta-alpha zinc fingers 290 318 IPR036236 -
Mibi03g1958 443 ProSitePatterns Zinc finger C2H2 type domain signature. 171 193 IPR013087 -
Mibi03g1958 443 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Mibi03g1958 443 ProSitePatterns Zinc finger C2H2 type domain signature. 297 320 IPR013087 -
Mibi03g1958 443 ProSitePatterns Zinc finger C2H2 type domain signature. 142 164 IPR013087 -
Mibi03g1958 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 325 IPR013087 -
Mibi03g1958 443 SUPERFAMILY beta-beta-alpha zinc fingers 180 233 IPR036236 -
Mibi03g1958 443 MobiDBLite consensus disorder prediction 336 443 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1958 73 428 C2H2 Transcription Factor Family AT4G06634 62.198 3.83e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi03g1958 zf-C2H2 0.0086 CL0361