Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1957 ATGTCAGGAAGTAATAACAACACCAATAGTAACAACATCCCTGTGACCCTCTTCAAGGAGGAAGTTGTCTACAAGGAATGCCTCCATAACCATGCAGCTTCCCTAGGAAAAGTGGCCACTGACGGCTGCTATGAGTTCCTCCAACCCACCATTCATGATGTTGTCGACGGTGAGCCACCGAAGGAGATGGCGGCGTTCCTCTGTGCAGTTTGTAACTGCCACCGGAACTTTCACAGGAAAAAACTTGTGTACACTCCCATAAATATGGTTGATACTGAAACTATTTTTAGCCATTACCACCACAACCACCACCAGCCAAACTCTCAGGTGGATGCTGACGTGGCGGCGGTGGGGCCCGCAAGGTCGCCACCGAAGAAGCAGAAGAAGGAGAGGACTAAGTTTAGTGAAGAACAAGTGAGGAGGCTGGTGAGTTTTGCTGAAAGGTTGGGTTGGAGATCAAGGAGAGCTGACAAAGAATTGATTCATAATTTTTGTGCTGATTTTGGGATTAGTCATAGGATATTTGTTGTGTGGCTGAACAATAATCGAAGAAGAGTTCTGAATAACAACAACAATAATAATGAAGAGGATCATCATCATCATGATCGAGCTGATGATGATCTTATGGATGATAATGATGATGAGGTTTAG 651 0.4485 MSGSNNNTNSNNIPVTLFKEEVVYKECLHNHAASLGKVATDGCYEFLQPTIHDVVDGEPPKEMAAFLCAVCNCHRNFHRKKLVYTPINMVDTETIFSHYHHNHHQPNSQVDADVAAVGPARSPPKKQKKERTKFSEEQVRRLVSFAERLGWRSRRADKELIHNFCADFGISHRIFVVWLNNNRRRVLNNNNNNNEEDHHHHDRADDDLMDDNDDEV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1957 216 Gene3D - 117 189 - -
Mibi03g1957 216 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 127 183 IPR006455 -
Mibi03g1957 216 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 81 IPR006456 -
Mibi03g1957 216 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 184 - -
Mibi03g1957 216 MobiDBLite consensus disorder prediction 190 207 - -
Mibi03g1957 216 Pfam ZF-HD protein dimerisation region 22 81 IPR006456 -
Mibi03g1957 216 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 24 81 IPR006456 -
Mibi03g1957 216 MobiDBLite consensus disorder prediction 189 216 - -
Mibi03g1957 216 ProSiteProfiles 'Homeobox' domain profile. 125 189 IPR001356 GO:0003677
Mibi03g1957 216 SUPERFAMILY Homeodomain-like 118 185 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1957 Mibi-ChrMibi03 54450010 54450660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1957 12 192 ZF-HD Transcription Factor Family AT2G02540 31.034 9.51e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mibi03g1957 ZF-HD_dimer 5.6e-21 No_clan