Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1953 ATGATGGCCAAACATACAAACCTCCGGCTTATTACCTACTCACAAGAGATTGTAGATGGACAGCCAATTTTTGTTTCTTCAAATTGTTTTCCTATTAAGGCTTCAAACTTGGAGCCTGCAGGCCATGCCTTCCATTCAGCTGCCCTTAAACTTCTTGGTGTTGAGGAAGATAATGCAGATGGTGATGATGAGAAGGTTGTTGATGATAAGCAACAGATGTATTATGCTTCATCTGATTCTTATAGCAGCAAGGGTAAAAAGAAATCTGGTTCTGGAGACAAGCAGCAAGATCACTATGCATTGTTGGGTTTGGGCCATTTAAGGTATCTTGCTACGGAGGATGAAATTCGTAAAAGCTATCGTGAAACTGCCTTGAGGTATCATCCGGATAAACAAGCTGCTCTTCTTCTTGGAGAGGAGACTGAAGCTGCAAAGCAGGCAAAGAAGGATGAAATAGAAACTCATTTTAAGGCAATCCAAGAAGCATATGAAGTATTGATTGATCCGTTAAAGAGAAGAATATATGATTCCACTGATGAGTTTGATGACGAAATTCCCACTGATTGTTCTCCACAAGACTTCTTCAAAGTGTTTGGTCCTGCTTTTATGAGGAATGGACGGTGGTCAGTTAATCAGCCAGTTCCATCTTTAGGAGATGACAATACTCCACTAAATGAAGTTGATGCATTCTACGATTTTTGGTATGCATTTAAAAGCTGGAGGGAGTTCCCTCATGCTGATGAATTTGACCTTGAGCAAGCAGAATCTCGAGACCATAGGAGATGGATGGAAAGGCAGAATGCAAAATTGTCAGAAAAAGCAAGGAAGGAAGAGTATGCACGGATTCGTACTCTTGTTGATAATGCTCATAAGAGAGACCCAAGAATATTGAGGAGAAAGGAAGAAGAAAAGGCTGAGAAGCAAAGGAAAAAAGAGGCCAAGATTCTGGCCAAAAAATTGCAGGAAGAAGAAGCTGCTAGAATTGAAGAAGAGGAGAAGAAACGGAAGGAGGAGGAGGAGAGACAAGCTGCAGAAGCTGCTTTACAACAAAAGAAGGTAAAGGAGAAAGAGAAAAAGCTCTTGAGGAAAGAGCGAACTCGTCTTCGAACGCTTGCAGCACCCGTTTTGTCACAGAGAACACATGACGTATCTGAGGGTGATGTAGAAAGTCTTTGCCTGTCACTTGATATGGAGAAGTTGAGGAGTTTGTGCCAAATGATGGAAGGAAAACCCATCTCAGAGCAAGCTAAAATTCTAAGAGATGCTCATGATTCTACAAAAGATGCAGATGACAAGAAACGTGGGAAAACTGATAAACTGGATGGTTCTGCAAGTGCTAATAATAGTGCCTCTCTAAGCAACTTCACCTATGAGAAGAAGGAAAAACCTTGGAGTAAAGAAGAGATTGAGCTATTGAGAAAAGCAATGCAAAAATATCCTAAAGGAACTTCTAGGAGGTGGGAGGTCGTCTCAGAGTACATTGGTACTGGAAGATCTGTGGAAGAAATTTTGAAGGCAACCAAAACAGTTCTCCTGCAGAAGCCTGATTCTTCCAAATCATTTGATGCATTCCTTGAGAAAAGGAAACCTGCACCATCAATTGAATCTCCGCTCTCAACCCGAGAAGAATTAACCGGCGAATCAGCTCCTGGAAGGCCTGCAAACAGTGCTACCTCAACAACAAATATCCCACGAGAGTCTCACAGCAAGATTACTTCAGACAAGCCAAGCTCTTCTGGTTCGGCATCTGCCAATGGAGCTTCCTCTAGTTCAGATCAAGACTCGTGGTCTGCTGTTCAGGAAAAAGCACTGGTCCAGGCCCTGAAAGCTTTTCCCAAGGAAACTAACCAGAGATGGGAACGAGTCGCGGCTGCAGTTCCTGGGAAGACAGTGAATCAGTGCAAGAAAAAATTTGTAACGTTGAAGGAGAACTTCAGAAGCAAGAAAAGTGCAACTTAA 1959 0.4242 MMAKHTNLRLITYSQEIVDGQPIFVSSNCFPIKASNLEPAGHAFHSAALKLLGVEEDNADGDDEKVVDDKQQMYYASSDSYSSKGKKKSGSGDKQQDHYALLGLGHLRYLATEDEIRKSYRETALRYHPDKQAALLLGEETEAAKQAKKDEIETHFKAIQEAYEVLIDPLKRRIYDSTDEFDDEIPTDCSPQDFFKVFGPAFMRNGRWSVNQPVPSLGDDNTPLNEVDAFYDFWYAFKSWREFPHADEFDLEQAESRDHRRWMERQNAKLSEKARKEEYARIRTLVDNAHKRDPRILRRKEEEKAEKQRKKEAKILAKKLQEEEAARIEEEEKKRKEEEERQAAEAALQQKKVKEKEKKLLRKERTRLRTLAAPVLSQRTHDVSEGDVESLCLSLDMEKLRSLCQMMEGKPISEQAKILRDAHDSTKDADDKKRGKTDKLDGSASANNSASLSNFTYEKKEKPWSKEEIELLRKAMQKYPKGTSRRWEVVSEYIGTGRSVEEILKATKTVLLQKPDSSKSFDAFLEKRKPAPSIESPLSTREELTGESAPGRPANSATSTTNIPRESHSKITSDKPSSSGSASANGASSSSDQDSWSAVQEKALVQALKAFPKETNQRWERVAAAVPGKTVNQCKKKFVTLKENFRSKKSAT 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1953 652 MobiDBLite consensus disorder prediction 413 463 - -
Mibi03g1953 652 SUPERFAMILY Chaperone J-domain 95 203 IPR036869 -
Mibi03g1953 652 MobiDBLite consensus disorder prediction 551 597 - -
Mibi03g1953 652 CDD SANT 601 642 IPR001005 -
Mibi03g1953 652 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Mibi03g1953 652 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 2 651 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Mibi03g1953 652 SUPERFAMILY Homeodomain-like 458 504 IPR009057 -
Mibi03g1953 652 Pfam DnaJ domain 97 176 IPR001623 -
Mibi03g1953 652 ProSiteProfiles SANT domain profile. 591 646 IPR017884 -
Mibi03g1953 652 Coils Coil 297 366 - -
Mibi03g1953 652 Gene3D DnaJ domain 80 190 IPR036869 -
Mibi03g1953 652 SMART dnaj_3 96 171 IPR001623 -
Mibi03g1953 652 MobiDBLite consensus disorder prediction 329 358 - -
Mibi03g1953 652 CDD SANT 463 503 IPR001005 -
Mibi03g1953 652 SMART sant 592 644 IPR001005 -
Mibi03g1953 652 SMART sant 460 513 IPR001005 -
Mibi03g1953 652 ProSiteProfiles Myb-like domain profile. 456 511 IPR001005 -
Mibi03g1953 652 Gene3D - 457 514 - -
Mibi03g1953 652 MobiDBLite consensus disorder prediction 519 597 - -
Mibi03g1953 652 MobiDBLite consensus disorder prediction 414 440 - -
Mibi03g1953 652 FunFam Myb family transcription factor 590 650 - -
Mibi03g1953 652 PRINTS DnaJ domain signature 120 135 IPR001623 -
Mibi03g1953 652 PRINTS DnaJ domain signature 151 171 IPR001623 -
Mibi03g1953 652 PRINTS DnaJ domain signature 102 120 IPR001623 -
Mibi03g1953 652 CDD DnaJ 97 168 IPR001623 -
Mibi03g1953 652 Pfam Myb-like DNA-binding domain 595 641 IPR001005 -
Mibi03g1953 652 Pfam Myb-like DNA-binding domain 462 503 IPR001005 -
Mibi03g1953 652 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Mibi03g1953 652 MobiDBLite consensus disorder prediction 441 458 - -
Mibi03g1953 652 Gene3D - 586 652 - -
Mibi03g1953 652 ProSiteProfiles Myb-like domain profile. 588 642 IPR001005 -
Mibi03g1953 652 SUPERFAMILY Homeodomain-like 594 649 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1953 Mibi-ChrMibi03 54402965 54404923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1953 98 297 C2H2 Transcription Factor Family AT1G74250 30.126 1.64e-19 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mibi03g1953 DnaJ 1.9e-17 CL0392