Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1952 ATGGATTTTAAAGGCGATCTTCCCCCGAAGCCTCCAATCAAGGGAATGAACAGCATAGAAGAACCGGTTTTCTTGCACGGGGAACTGGATCTACATATCATAGGAGCGAAACATCTTCCAAATATGGATTTTAACACTGAAACCATGAGAAAATGTCTTACTGCGGGAAACAATTGTGCACCTCCATTTGTAAAAGGACTCAAGACAAATTCTGGAAGACATAAAATGATCACCAGTGATCCTTATGTCTCTGTCTCTCTAGCAGGGGCTACTGTAGTTCAAACTAGAGTCATATCTAATTGTGAGAACCCTATGTGGGATGAGCATTTTATTGTGCCAGTTGCTCATCCTGTTCAAAAAGTTGTGTTTCTTGTGAAAGATGATGACGTTTTTGGAGCTGACCTCATTGGAGTCGTGGAAATATCTGCTCGGAAGATTTTGCTGGGAAATACTGTTAATGATTGGTTTCCCATCATCAGCAGTGGAAACTACTGCTTGAAATCTTATCCTGAGTTGCATATTTCCTTAAAGTTTGTGGCCGTGGAAGACAGGAAGCAGACAAGTTGTTTTGGTATTCCTAATACATATTTCCCTCTCCGAAAAGGTGGGAGAGTAACTCTTTATCAAGATGCACACGTACCAAATGGTATGCTACCTGAAATTCTACTTGAGGGTGGAAAAGTCTATAACCAGGGTACATGTTGGGAGGATATATGCCATGCCATTCTGGAAGCTCATCATTTAATATATATCATAGGGTGGTCTATTTACCACCCTGTAAAGCTTGTCAGAGAACCAACAAGGCCAATACCTGCTGGTGGAGAGCTTTCACTGGGAGAATTGTTGAAGTATAAATCACAAGAAGGAGTCCGCGTGGTTATCTTGATTTGGGATGACAAAACATCGCATGACAAGTTGTTTCTGAAAACGGAAGGTGTCATGCAGACACATGATGAAGCAACAAAAAAATTCTTTAAACACTCCACTGTCCAATGCGTGCTATCTCCACGCTATCCAAGCCATAAGCTCAGTATTTTCAAGCAACATGTTGTGGGAACGCTTTTTACACATCATCAGAAGTGCGTGCTTGTTGACACTCAAGCTTCTGGGAATAATAGGAAAATAACTGCTTTTATTGGTGGCCTGGATCTATGTGATGGAAGATATGATACCCCTGAGCATCGGCTATTCACCGATCTTGATACGGTCTTCAAAGATGACTTCCGTAATCCTATAGTTCCGTCCAGTTATCCTTGTGGACCAAGAGAGGCATGGCATGACTTGCATTGCAAAGTTGAAGGCCCAGCTGCATATGATATATTAACTAATTTTGAGCAAAGATGGAGGAAAGCCAAAAAATGGCGTAACTTAAGGCTAAACAAGGTTACAAATTGGCATGATGATGCTTTGCTAAGGCTAGATCGAATATCATGGATTGTCACACCAGCTATTGGTGTTGATGATGATGCAAGTGTCCATGTAACTGAAGAAAATGATCCTGAGACTTGGAATGTGCAGGTATTTCGGTCCATAGATTCAGGATCTGTCAAGGGTTTTCCTAAGGATGCTACGGAAGCTAAGGCTCAGAATCTTATCTGCGGAAAAAATTTGAAAGTTGACAAAAGCATTCATGCTGCTTATGTATACGCAATAAGATCAGCTCAACGCTTCATATATATAGAGAATCAATATTTTGTTGGATCGTCATTTCATTGGCCTTCCTACAAAACTGCAGGTGCACATAACTTAATTCCTATGGAGTTGGCTTTGAAAATTGCCAGCAAGATCAGTGCCAGAGAACGTTTTGCTGTCTATATAGTCATCCCCATGTGGCCAGAAGGGGTTCCATCTAGTGCTCCTGTACAAGAAATCTTGTTTTGGCAGGGACAGACAATGTCTATGATGTACAGGATTGTTGCAGATGCCCTTAAACAGGCAGGTCTCGCTGACAGTTTTCACCCACAAGATTATCTCAACTTTTATTGCCTTGGAAGGCGTGAGCCTTTGTTATCTCAAAGCCCTTCACAGGCAGTTCATTCAGCTGAAAACCGTGCTTTGGCATTGGTCAGAAAATTCAGACGGTTTATGGTCTACGTTCATGCCAAAGGGATGATAGTTGATGATGAGTACGTCCTCATTGGATCTGCAAATATTAACGAGAGATCTTTGGATGGTTCAAGGGATACAGAAATCGCAATGGGTGCTTATCAACCAAATTACACAAAGAAAGCAAAGGAGGATCGTCCTCATGGCCAGGTGTATGGTTACAGAATGTCACTGTGGGCTGAACATCTGGGTAGTGTTGAAGATATTCTTGATGAACCAGAGAGCTTGCAATGTGTGAGACATGTCAATAGTGTTGCCAGACGGAACTGGGATGCATTTGTATCTGATGATGCAAGGATCATGTGGGGACAATTGATGCAATATCCTGTTCATATCAGTGCAGATGGGACTGTCAGTGCACTCTCAGATCATGAGACCTTTCCTGATGTTGGTGGTAAAATCCTTGGATCCCCCAACTCTCTTCCTGATGCACTAACCACATGA 2550 0.4208 MDFKGDLPPKPPIKGMNSIEEPVFLHGELDLHIIGAKHLPNMDFNTETMRKCLTAGNNCAPPFVKGLKTNSGRHKMITSDPYVSVSLAGATVVQTRVISNCENPMWDEHFIVPVAHPVQKVVFLVKDDDVFGADLIGVVEISARKILLGNTVNDWFPIISSGNYCLKSYPELHISLKFVAVEDRKQTSCFGIPNTYFPLRKGGRVTLYQDAHVPNGMLPEILLEGGKVYNQGTCWEDICHAILEAHHLIYIIGWSIYHPVKLVREPTRPIPAGGELSLGELLKYKSQEGVRVVILIWDDKTSHDKLFLKTEGVMQTHDEATKKFFKHSTVQCVLSPRYPSHKLSIFKQHVVGTLFTHHQKCVLVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFTDLDTVFKDDFRNPIVPSSYPCGPREAWHDLHCKVEGPAAYDILTNFEQRWRKAKKWRNLRLNKVTNWHDDALLRLDRISWIVTPAIGVDDDASVHVTEENDPETWNVQVFRSIDSGSVKGFPKDATEAKAQNLICGKNLKVDKSIHAAYVYAIRSAQRFIYIENQYFVGSSFHWPSYKTAGAHNLIPMELALKIASKISARERFAVYIVIPMWPEGVPSSAPVQEILFWQGQTMSMMYRIVADALKQAGLADSFHPQDYLNFYCLGRREPLLSQSPSQAVHSAENRALALVRKFRRFMVYVHAKGMIVDDEYVLIGSANINERSLDGSRDTEIAMGAYQPNYTKKAKEDRPHGQVYGYRMSLWAEHLGSVEDILDEPESLQCVRHVNSVARRNWDAFVSDDARIMWGQLMQYPVHISADGTVSALSDHETFPDVGGKILGSPNSLPDALTT 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1952 849 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 24 178 IPR035892 -
Mibi03g1952 849 SMART C2_3c 28 155 IPR000008 -
Mibi03g1952 849 Gene3D C2 domain 19 181 IPR035892 -
Mibi03g1952 849 SUPERFAMILY Phospholipase D/nuclease 543 780 - -
Mibi03g1952 849 CDD C2_plant_PLD 22 179 - -
Mibi03g1952 849 ProSiteProfiles C2 domain profile. 10 156 IPR000008 -
Mibi03g1952 849 Pfam Phospholipase D C terminal 769 839 IPR024632 -
Mibi03g1952 849 Pfam PLD-like domain 602 743 IPR025202 -
Mibi03g1952 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 695 722 IPR001736 GO:0003824
Mibi03g1952 849 Pfam Phospholipase D Active site motif 354 388 IPR001736 GO:0003824
Mibi03g1952 849 Pfam C2 domain 27 158 IPR000008 -
Mibi03g1952 849 Gene3D Endonuclease Chain A 506 750 - -
Mibi03g1952 849 SMART pld_4 353 388 IPR001736 GO:0003824
Mibi03g1952 849 SMART pld_4 695 722 IPR001736 GO:0003824
Mibi03g1952 849 FunFam Phospholipase D delta 225 469 - -
Mibi03g1952 849 PANTHER PHOSPHOLIPASE D 21 838 IPR015679 -
Mibi03g1952 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 353 388 IPR001736 GO:0003824
Mibi03g1952 849 SUPERFAMILY Phospholipase D/nuclease 183 457 - -
Mibi03g1952 849 Gene3D Endonuclease Chain A 225 470 - -
Mibi03g1952 849 PIRSF PLD_plant 14 849 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1952 Mibi-ChrMibi03 54390560 54400591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1952 24 848 Phospholipase D Gene Family (Wang group) AT4G11850 54.048 0.0 898