Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1945 ATGTGTTTTTTCTCGCTTTTGCTGGAAATGTTGCCTTTCTGTTTTTTGGGTAGTCTCTTATTGCATTTGAATGTTCGCAGTCAAATCAATTCAGCTGGTGATGGGCTTCCTAAAGTCAATTGGTTGGATCATGCCAGTGCTCATGAGAACTTTTCATGTCAAAACAAGTTTTTGACTTCCACCTTTCTGTTCTCCTTGCCAACTCAAAAGCCATGCTCTGACGAAGCCTTGGGTGGGAGATTTGTACTCTGTCAAAATCAAAATATTCAAAGTTTGCAGAGAGCACAAGTTGAGAAGGCTTGGTGTGCTCTTTCAAGTCTACAGAATTCTTGCAGGAACTATGCCAAACCGGGAAAAACTGTACAAATCAGTCCTCCGGTTCTTGCAGACAAGAGAACATCTACATGGCAGAGAAGTTCTGAGAATAATATATGCTCACAATTTAATAATTTTAACGTCTTAAGTGAAAATAATGTGAAATCTAATCAACACTTTCCATCAAGCAATCCTATAGCTGGAGGAGGGGATAGTTTGAGGTGCCTTGATGAAGCCACAACTCCAACAATCAATAATCATTGTTCTCGAGTTTTGAATGGTTCAGTGAACAACTGTACAAAGTATGCTGCTGAAGTTAACAAGTCGACAAATTGTATGGCCGACAACATTGATGAGGATGATGACGACATACTTGGGAACATTGATGTTGACCAAATAGTGGAAAACTACCAGTCGACTTGCACTCCTCAACCATCAACGGTCAAGTTTCCTCCAATTTCTCCAACTGTTGATGCAAATAGTTTTGCTACACCAGGGGAACGTGGTTTGCCACCAGAGTTGTGCTCAGATTGCATTCATGGTTATAAGGTAGCGCTTTGCCCTGAAGCAGCAAACCATTTGCAGGAATGGAAGGACAATCTGATTGCTATCTCCAATGAACTGCTTGACAATGTTGACCGCCTCAATTCTTCACAGATAGCAAAGCTTCGCCAAGACAGGTCACAGTTAAATAAGCAAATTCAGCAGCTTGAAAGATATATTCATTCCTGTAAGCTTGATGAGGAAAGACAAAATTCACATTTTTCTGCGTCCACAGCTCCTCCAAGTTCTTTTCAGTTTGAGAGACCAAATCAAAATGAACTCAGGAGTGGATCAATGAGATATGATAACCAGGCTTATATGAGTAATGAGCCATGTGGAATGTCATTCCAGTCATTTTCATTCTCGTCTGTTGATAAGTATGACATGTCGTCAGGCCCAATGGAGAGAGAAGCATTTATTCCAAAGATTATTGATGTTAATTACATTGAAGGTTCTGGAGACAGACGCTGGAGTGACCAAAATTTTCCTTGGACAAAAAAGCTGGAGGCCAATAATAAAAAGGTTTTTGGAAATCATTCATTCCGCCCCAATCAGAGAGAGGTTATCAATGCCACAATGAGCGGATATGATGTTTTTGTCTTAATGCCTACGGGTGGAGGGAAGAGTTTGACCTACCAGCTTCCTGCTCTTATTTGTCCAGGTATAACTTTAGTAATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTGTTGCAGGCAAATATCCCTGCTACATACTTAAGTTCCAATATGGATTGGGCTGAGCAGCAGGAAATCCTGAGAGAATTTAATTCTGATTATTGTAAATACAAGTTTTTATATGTAACACCCGAAAAAGTTGCCAAAAGTGATGTTCTTTTGCGGCAATTGGAGAGTTTACATGTTCGTGAGTTGCTTGCTAGGATTGTAATTGATGAAGCTCACTGTGTGAGTCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGCATATTGAAACAAAAATTTCCAAATACTCCTGTTCTAGCTTTGACAGCTACAGCTACAGCCAGTGTAAAAGAAGATGTTGTTCAAGCTCTTGGTCTTGTCAACTGCATTGTTTTCCGGCAAAGTTTCAATCGCCCAAACTTATGGTACTCTGTTGTCCCCAAGACAAGAAAGTGTTTGGAGGACATTGATAAATTCATTAGGGAAAATCACTATGACGAATGTGGCATTATTTATTGTCTTTCACGAATTGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGTGGACATAAAACTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGAGCCTTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATGTGTGCTACTGTGGCATTTGGAATGGGAATTAACAAACCTGATGTTCGTTTCGTAATTCATCACTCTCTTCCAAAATCTATTGAGGGCTACCACCAGGAGTGCGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGCATATTATATTATAGCTACAGTGACTATATTCGAGTTAAGCACATGATAACACAAGGAGCAATAGAGCAAAGTCCAATGCCATCTGGATATAATCGATTAAATTCAACAAATTCAGGGAGGGTGCTAGAAACTAACACCGGAAACCTTCAGCGGATGGTAAGCTATTGTGAAAATGATGCTGATTGTCGACGGCTTCTGCAGCTTGCTCATTTGGGGGAGAGGTTTGATTCTGGAAACTGTAATAAAACATGTGATAACTGTTTGAAGGTCAAGAGTTTTATTGAGAAGGATGTCACAGAGATCGCAAAGCAACTGGTTGAGCTAGTTAAGATAACGGGGCAGAATTTTTCATCATCTCATATCTTAGAAGTGTACCGGGGTTCCTTAAACCAGTTTGTCAAGAAACACCGGCATGAAACAGTACGGCTTCATGGTGCTGGGAAGCATCTAGCTAAAGGAGAGGCTTCCCGTGTATTGCACCATCTTGTTGTCGAAGATTTTCTTGTGGAGGATGTAAAGAAAAGTGATATTTATTTATCGGTCTCCTCAGTCTTAAAGGTCAATGAGTTCAAGGCCCGTAATCTGTTTGGTGGCCAGAAAATTATATTAAGAGTTCCTTCCCCGGAGAAAGCTTCGAAGTTGGGAACTTTAGGCGTAACACCAGCTAAAGGCTCTCTGACATCTGGAAAGGTGAATTTTCCACAAAATGACACTCCTGCCTCGCCTCAACCTGAAGTGGACTTGAATCTTTCAGCCAAGTTGTTCACTGCTCTGCGGATGATGCGGACAGCTATTGTCAAAGAAGCTGGCGATGGTGTCATGGCCTACCACATTTTTGGAAATGCTACGCTGCAGCTGATAAGCAAGAGAGTACCAAGAACAAAGGAAGAGCTCCTTGAGATCAATGGCATTGGCAAGGCCAAGGTAAGCAAATATGGAGATCGGTTACTGGAAACCATTGAAAATACCATAAGGGAACATCACAAGTTGGACAAAAGCAGCAGCTGGAGCAACGAGAGTAATGACTCTGCTAAAAGGAGACGGGGCTCAAATGGAGAGCCAAACTTAAAAGGGGACAATGACAATGATGACGATGAAGGCACAAGAAGTAATGCTCGTTCAAAGAAAAGGACGATCAAGAGAAAGAATATAAATGCTGTGGTTTATGATTCTGGTGGAGAAGAAGATTATTTTAAAGATTGCTTAGATGAAGATTTAGATTTTGACAATATAGAGAATACTGCATTGGATGTAAATCGTAGGAATTCTGAAGGAAGAGTTCTTCCTCAATGGACATCGTGA 3660 0.4079 MCFFSLLLEMLPFCFLGSLLLHLNVRSQINSAGDGLPKVNWLDHASAHENFSCQNKFLTSTFLFSLPTQKPCSDEALGGRFVLCQNQNIQSLQRAQVEKAWCALSSLQNSCRNYAKPGKTVQISPPVLADKRTSTWQRSSENNICSQFNNFNVLSENNVKSNQHFPSSNPIAGGGDSLRCLDEATTPTINNHCSRVLNGSVNNCTKYAAEVNKSTNCMADNIDEDDDDILGNIDVDQIVENYQSTCTPQPSTVKFPPISPTVDANSFATPGERGLPPELCSDCIHGYKVALCPEAANHLQEWKDNLIAISNELLDNVDRLNSSQIAKLRQDRSQLNKQIQQLERYIHSCKLDEERQNSHFSASTAPPSSFQFERPNQNELRSGSMRYDNQAYMSNEPCGMSFQSFSFSSVDKYDMSSGPMEREAFIPKIIDVNYIEGSGDRRWSDQNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATYLSSNMDWAEQQEILREFNSDYCKYKFLYVTPEKVAKSDVLLRQLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHYDECGIIYCLSRIDCEKVAEKLQECGHKTAFYHGSMDPAQRAFVQKQWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYSYSDYIRVKHMITQGAIEQSPMPSGYNRLNSTNSGRVLETNTGNLQRMVSYCENDADCRRLLQLAHLGERFDSGNCNKTCDNCLKVKSFIEKDVTEIAKQLVELVKITGQNFSSSHILEVYRGSLNQFVKKHRHETVRLHGAGKHLAKGEASRVLHHLVVEDFLVEDVKKSDIYLSVSSVLKVNEFKARNLFGGQKIILRVPSPEKASKLGTLGVTPAKGSLTSGKVNFPQNDTPASPQPEVDLNLSAKLFTALRMMRTAIVKEAGDGVMAYHIFGNATLQLISKRVPRTKEELLEINGIGKAKVSKYGDRLLETIENTIREHHKLDKSSSWSNESNDSAKRRRGSNGEPNLKGDNDNDDDEGTRSNARSKKRTIKRKNINAVVYDSGGEEDYFKDCLDEDLDFDNIENTALDVNRRNSEGRVLPQWTS 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1945 1219 FunFam ATP-dependent DNA helicase RecQ 440 657 - -
Mibi03g1945 1219 Gene3D - 432 657 IPR027417 -
Mibi03g1945 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 799 IPR027417 -
Mibi03g1945 1219 MobiDBLite consensus disorder prediction 356 378 - -
Mibi03g1945 1219 Gene3D HRDC domain 1031 1118 IPR044876 -
Mibi03g1945 1219 PANTHER DNA HELICASE RECQ FAMILY MEMBER 440 1124 - -
Mibi03g1945 1219 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 459 934 IPR004589 GO:0004386|GO:0006310
Mibi03g1945 1219 Pfam DEAD/DEAH box helicase 469 637 IPR011545 GO:0003676|GO:0005524
Mibi03g1945 1219 Gene3D - 658 877 IPR027417 -
Mibi03g1945 1219 Pfam RecQ zinc-binding 792 874 IPR032284 -
Mibi03g1945 1219 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 475 650 IPR014001 -
Mibi03g1945 1219 MobiDBLite consensus disorder prediction 358 378 - -
Mibi03g1945 1219 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 589 598 IPR002464 -
Mibi03g1945 1219 MobiDBLite consensus disorder prediction 1114 1163 - -
Mibi03g1945 1219 Pfam HRDC domain 1038 1106 IPR002121 GO:0003676
Mibi03g1945 1219 Pfam RQC domain 880 995 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mibi03g1945 1219 FunFam Bloom syndrome, RecQ helicase 658 878 - -
Mibi03g1945 1219 Coils Coil 325 345 - -
Mibi03g1945 1219 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 675 820 IPR001650 -
Mibi03g1945 1219 SMART helicmild6 700 781 IPR001650 -
Mibi03g1945 1219 MobiDBLite consensus disorder prediction 1114 1159 - -
Mibi03g1945 1219 ProSiteProfiles HRDC domain profile. 1034 1116 IPR002121 GO:0003676
Mibi03g1945 1219 CDD DEXHc_RecQ 455 657 - -
Mibi03g1945 1219 Gene3D - 881 990 IPR036388 -
Mibi03g1945 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 924 IPR027417 -
Mibi03g1945 1219 CDD SF2_C_RecQ 658 790 - -
Mibi03g1945 1219 SMART RQC_2 883 993 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mibi03g1945 1219 SMART hrdc7 1034 1116 IPR002121 GO:0003676
Mibi03g1945 1219 SUPERFAMILY HRDC-like 1037 1110 IPR010997 GO:0000166|GO:0044237
Mibi03g1945 1219 Pfam Helicase conserved C-terminal domain 674 780 IPR001650 -
Mibi03g1945 1219 SMART ultradead3 463 666 IPR014001 -
Mibi03g1945 1219 ProSiteProfiles Rhodanese domain profile. 690 732 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1945 Mibi-ChrMibi03 54278730 54287995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1945 689 812 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 3.67e-07 52.0