Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1939 ATGGGTGAGAAGAAGGATTCAGGGTCAAGCTTGAAGAAGAATGAGAATGGAGAGCAGAAAGAGGAGAATAAAGAAGATTTGGAAGAACAGCCTCATCTTGAAGAAGACTATGAGTCTCCAACTTTCAATCTTCAAAATGTTTCAAAAGTCATTCTTCCTCCTTTGGGTGCTTCCAGTTATAATGATCACAACCCACCTCACTCCAAAACATGGATCATATCCCCAATGGATACAAGATACAGGTGTTGGGAGAGTTTCATGGTGGTGCTGGTGGCATATTCAGCATGGGTGTATCCATTTGAAATAGGGTTTCTGATGTCTTTTCCAGCACATAAACTTTTCATTGTGGATAATGTCATTGATCTCTTCTTTGCTATTGACATTGTTCTCACTTTCTTCCTTGCTTACATTGATCGCTCCACACAACTTCTTGTTAGAGACTCCAAACAAATTGTTCTGAGGTACGTATCAACATGGTTTGTGATGGATGTGGCATCAAGCATACCATATGAGGGATTGGGTTATTTGTTCACAGGCAAACGCAAAGTGACTCTTCCTTTCTTCCTATTGGGCATGCTTAGACTTTGGAGGCTTCGAAGAGTCAAGCAATACTTCACCAGGCTTGAGAAAGATATCAGATTCAGCTATTTTTGGATCAGATGTGTTAGACTCCTTTGTGTAACATTTTTCATAGCACACTGTAGTGGGTGCCTGTTTTATCTACTAGCTGACGTGTTCCCTAATTTGGGAAAGACATGGATTGGAGCAATAAATCCAGATTTCAAAGAGACGAGCATTTGGATTAGATACGTATCAGCCATGTATTGGTCTCTCACCACCATGACCACCGTAGGCTATGGTGACTTCCATGCTGTGAACCCCATGGAGATGGCCTTCACCATTTGTTATATGTTCTTCAATCTTGGCCTCACAGCTTACTTGATAGGGAACATGACTAATCTTGTTGTCCAAGGAACTGGTCGTACCATGGAATTTAGAAACAACATTGAAGCTGCAACAAATTTTGTGAGCAGAAACAGAGTATCAGCGAGGCTAAAAGAACAAATAATTGCTTATATGTGCTTAAGATACAAGGCAGAGAGTTTGAACCATCATCAGCTTATGGAACAACTTCCCAAATCAATACGCAAAGCCATTTGTCAACACTTGTTCCTTCCTGCTGCACAGAATGTTTATCTTTTTAAAGGTCTCTCCAGAGACATCTTGTTATCCTTGGCTGCAAAAATGAAGGCTGAGTACATACCTCCAAAAGAAGAAGTGATCACGCAAGGTGAAGCAGCAAAGGATGTATACATAATAGTGTCTGGAGAAGTGGAGATCGTTGGTTATGTGATGAACAAAGAGAAAGTTTTAGGGATTTTACAAAGATGGGACATGTTTGGAGAAGTTGGTGCTCTTTGTTGTAAGCCTCAGAGCTTTACTTACAGAACCAAGATTCTCACACAGCTCTTGAGGCTCAAAACCAATGACTTCACTGAGACAATGCAGACTAAAAAGGAAGAAAATATAAAAATGCTCAAAAATTTCCTCCTGCACTTGAAGAAGCTACACGATCTGAATGGTGGAGAATTGGTGATTGATTGGAGCAGAGAAGATGACCCAAATATGGCAGTGAACTTGTTACATGTGGCCTCAACTGGCAATTCTGCTTTTCTTGAAGAGCTTTTGAAGGCAGGCTTGGATTCTAGTGTTGCAGACTCCAAAGGCAAAACCCCATTGCACATGGCAGCATTAAAGGGCCATGAAGAGTGTGTAAAAGTGTTAGTTAAGCATGCATGCAACATACATGCAAGAGACATAAATGGAGACACAGCACTATGGGACGCCATAGCTTCAAAGCATTACTCAATATTCAGAATCCTATACCAGCTTTGTGTGCAGTCTGATCAACACACAGCAGCTGATCTTCTTTGTAAAGCAGCAAAGAGAAATGAACTAACAGTGATGAGTGAGCTTTTAAAGCAAGGCTTGAACGTTGAGTCCAAAGATCACCATGGTTGTACGGCAATGCAAGTTGCCTTGCAAGAGAATCATGTGGACATGATTCAATTTCTTTTCATGAATGACTCAAATGTTGCTGCTGCTCCTCTTAATAACCATAACCATGAAGAGGAAGGGCAACACAACAATATTTGGGGAACATATAATAATAATTATAGGCAAATTGCTTCAAGAGTTAGCATATTTAGAGGTCATCCTATATTGAGAAGACAACAAGGCTGCATTGAAGCTGGTAAGATGATAAGGTTCCCTAACTCAATAGAGGAGCTCAAGATCATTGCAGGTGAAAGATTTGGGTTTGATGCAAAGGATGCAATGGTGACTGATGAAGGTGGAGCAGAAATTGATTCTATTGATTTGATCAGAGATAATGATAAACTCTTTATTGTTGAAAAGTTATAG 2424 0.4026 MGEKKDSGSSLKKNENGEQKEENKEDLEEQPHLEEDYESPTFNLQNVSKVILPPLGASSYNDHNPPHSKTWIISPMDTRYRCWESFMVVLVAYSAWVYPFEIGFLMSFPAHKLFIVDNVIDLFFAIDIVLTFFLAYIDRSTQLLVRDSKQIVLRYVSTWFVMDVASSIPYEGLGYLFTGKRKVTLPFFLLGMLRLWRLRRVKQYFTRLEKDIRFSYFWIRCVRLLCVTFFIAHCSGCLFYLLADVFPNLGKTWIGAINPDFKETSIWIRYVSAMYWSLTTMTTVGYGDFHAVNPMEMAFTICYMFFNLGLTAYLIGNMTNLVVQGTGRTMEFRNNIEAATNFVSRNRVSARLKEQIIAYMCLRYKAESLNHHQLMEQLPKSIRKAICQHLFLPAAQNVYLFKGLSRDILLSLAAKMKAEYIPPKEEVITQGEAAKDVYIIVSGEVEIVGYVMNKEKVLGILQRWDMFGEVGALCCKPQSFTYRTKILTQLLRLKTNDFTETMQTKKEENIKMLKNFLLHLKKLHDLNGGELVIDWSREDDPNMAVNLLHVASTGNSAFLEELLKAGLDSSVADSKGKTPLHMAALKGHEECVKVLVKHACNIHARDINGDTALWDAIASKHYSIFRILYQLCVQSDQHTAADLLCKAAKRNELTVMSELLKQGLNVESKDHHGCTAMQVALQENHVDMIQFLFMNDSNVAAAPLNNHNHEEEGQHNNIWGTYNNNYRQIASRVSIFRGHPILRRQQGCIEAGKMIRFPNSIEELKIIAGERFGFDAKDAMVTDEGGAEIDSIDLIRDNDKLFIVEKL 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1939 807 Coils Coil 10 30 - -
Mibi03g1939 807 ProSiteProfiles KHA domain profile. 732 807 IPR021789 -
Mibi03g1939 807 Gene3D Helix hairpin bin 326 387 - -
Mibi03g1939 807 MobiDBLite consensus disorder prediction 1 35 - -
Mibi03g1939 807 FunFam Potassium channel KAT2 388 524 - -
Mibi03g1939 807 Gene3D - 646 720 IPR036770 -
Mibi03g1939 807 ProSiteProfiles cAMP/cGMP binding motif profile. 400 519 IPR000595 -
Mibi03g1939 807 PANTHER POTASSIUM CHANNEL AKT1 44 804 IPR045319 GO:0005249|GO:0006813
Mibi03g1939 807 ProSiteProfiles Ankyrin repeat region circular profile. 575 606 - -
Mibi03g1939 807 SUPERFAMILY Ankyrin repeat 539 703 IPR036770 -
Mibi03g1939 807 CDD CAP_ED 400 513 IPR000595 -
Mibi03g1939 807 Pfam Ankyrin repeats (3 copies) 548 629 IPR002110 GO:0005515
Mibi03g1939 807 SMART cnmp_10 400 517 IPR000595 -
Mibi03g1939 807 FunFam Potassium channel KAT3 82 324 - -
Mibi03g1939 807 MobiDBLite consensus disorder prediction 1 27 - -
Mibi03g1939 807 SUPERFAMILY Voltage-gated potassium channels 75 323 - -
Mibi03g1939 807 Gene3D - 509 645 IPR036770 -
Mibi03g1939 807 SMART ANK_2a 608 637 IPR002110 GO:0005515
Mibi03g1939 807 SMART ANK_2a 543 571 IPR002110 GO:0005515
Mibi03g1939 807 SMART ANK_2a 672 701 IPR002110 GO:0005515
Mibi03g1939 807 SMART ANK_2a 639 668 IPR002110 GO:0005515
Mibi03g1939 807 SMART ANK_2a 575 604 IPR002110 GO:0005515
Mibi03g1939 807 PRINTS EAG/ELK/ERG potassium channel family signature 128 137 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mibi03g1939 807 PRINTS EAG/ELK/ERG potassium channel family signature 314 323 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mibi03g1939 807 PRINTS EAG/ELK/ERG potassium channel family signature 117 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mibi03g1939 807 PRINTS EAG/ELK/ERG potassium channel family signature 270 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mibi03g1939 807 PRINTS EAG/ELK/ERG potassium channel family signature 296 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mibi03g1939 807 Gene3D Jelly Rolls 388 508 IPR014710 -
Mibi03g1939 807 Gene3D - 81 324 - -
Mibi03g1939 807 PRINTS Ankyrin repeat signature 576 591 IPR002110 GO:0005515
Mibi03g1939 807 PRINTS Ankyrin repeat signature 655 669 IPR002110 GO:0005515
Mibi03g1939 807 Pfam KHA, dimerisation domain of potassium ion channel 732 803 IPR021789 -
Mibi03g1939 807 Pfam Cyclic nucleotide-binding domain 420 504 IPR000595 -
Mibi03g1939 807 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 427 443 IPR018488 -
Mibi03g1939 807 SUPERFAMILY cAMP-binding domain-like 328 515 IPR018490 -
Mibi03g1939 807 Pfam Ion transport protein 81 326 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mibi03g1939 807 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1939 Mibi-ChrMibi03 54220001 54230476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1939 34 580 Ion Channels AT4G22200 65.154 0.0 755