LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi03g1937	ATGAAGATTCTTGTGGTTCTTCTCTTCCTCTTCTTCCCCATGTTTTTTGTTACCCCTTCTTCTTCTTCTTCTTCTGTTAACAATTCCACTTGCCCCATGGATCTAAACTATGTCCTAACAATCCCATGGAACTCATCCATGTGCCAAAACTTCCATCCCTTAAGTTTCATAGGTGACACAAGAAGAAGCCATTGTTGCCAAACATTACTTTCCCTAATTGGAATAGGCCTTGCTCAACATCTCAAGCAAACCTCCATGTTCAACCTCCCAAATCTCCCTACTTCCAAGTTTTGCCTCCATGATTTCCAATCCAAACTCTCTTCTCTCTCCCTCCCTGATGACCTTACCTCCACTTGCTTTGATCCTCTTCAATTTGTTATTAATCGTAATGTCTGTGCTAAAATCCAAACCATCCCTGATTGGATTGCGAAGCTTGGTCAAAAGACGTCGCTTAATGATGGTTGCAAACCAGATTTAACAGATCTCACTAGGTGCGGTGCTTGTGTTGCTGCAGGGTTTCAGGTTCAGCAACAACTCACAAATATTGATGGTAATAGTTCACATGCTACAAATTGTTTTCAATTTGCTATTTTGTATGCTGCTGGTATTGTTAATGAGTTTGGTCCAGAGAGTTATGGTGCTGTGACTTGCATTTTTGGTATGTCGGTTTATCCAAGTATGGATTCTGGGAAAAATGGTAGGCATCAAGCTCTTGTTTTTGGGTTAACTGGAGCTGGGGTTGGGTTGTTAGCTATGTTTGGTTTGTTGGGTACGTATTTATGGTATGATAGGAAGTGGAGGAGGAGAAAGCTTGAGACTTTTGGGTTTGATGTTGATCCTGAAGAGCAAGGGTCTAGACCTAGGATGAGGCCAAATACTGGATCAATTTGGTTTAAAATTGAGGAGCTTGAGAAGGCTACTAATGGTTTTTCATCTAAGAACTTCATTGGAAGAGGTGGGTTTGGGATGGTTTATAAGGGGACTTTGGCGGATGGATCAGTTGTCGCGGTTAAGAGGATTCTGGAATCTGATTATCAAGGGGATGCTGAGTTCTGCAATGAGGTTGAGATTATTAGTAATCTGAAGCACCGGAATTTGGTGCCGCTTAGAGGGTGTTGTGTGGTGGATGATGGTGAGAGTTTTGAGGAAAGAGGTCAGAGATATCTTGTTTATGACTACATGCTAAATGGTAACCTTGAACACCATCTCTTCTTATCATCACCATCAGTGGTGGGAAATCATAATGAGAAGAGATCATTGACTTGGCCACAGAGGAAAAGCATAATCTTGGATGTGGCCAATGGGTTGGCTTACTTGCATTATGGAGTTAAGCCTTCTATTTATCACAGAGACATCAAGGCCACCAATATTTTACTTGATGCGGATATGAGGGCGAGAGTTGCGGATTTCGGGCTCGCCAAGCAGAGTAGGGAAGGTCAGTCTCATCTCACTACCAGGGTTGCTGGAACTCATGGATATCTTGCCCCAGAGTATGCGCTGTATGGTCAGCTTACCGAGAAGAGTGATGTTTACAGCTTCGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGACTTGTCTTCATCAGGATCTCCTAGGGCATTCTTGATCACAGATTGGGCTTGGTCCTTGGTTAAATCAGGGAACATAGACGAGGCTTTAGATGCTTCCCTTGTAAAAGATGGCGATTGGCCAAGCTCAAATCCAAAGAGCATAATGGAAAGGTTTTTGCTCGTGGGGATTCTGTGCTCTCATGTGATGGTTGCTTTGAGGCCAACGATTTCTGAGGCTTTGAAGATGTTGGAAGGCGATGTCGAAGTTCCAGAAATCCCCGACCGGCCTATGCCTCTCGGGCATCCTTCATTTTACAATGATAGCAACAATACTTTCAGCATATCTCCAGCATTAAGCGGCCCAAAATTGCATAGTGGAGACATGCTCAGGTAA	1956	0.434	MKILVVLLFLFFPMFFVTPSSSSSSVNNSTCPMDLNYVLTIPWNSSMCQNFHPLSFIGDTRRSHCCQTLLSLIGIGLAQHLKQTSMFNLPNLPTSKFCLHDFQSKLSSLSLPDDLTSTCFDPLQFVINRNVCAKIQTIPDWIAKLGQKTSLNDGCKPDLTDLTRCGACVAAGFQVQQQLTNIDGNSSHATNCFQFAILYAAGIVNEFGPESYGAVTCIFGMSVYPSMDSGKNGRHQALVFGLTGAGVGLLAMFGLLGTYLWYDRKWRRRKLETFGFDVDPEEQGSRPRMRPNTGSIWFKIEELEKATNGFSSKNFIGRGGFGMVYKGTLADGSVVAVKRILESDYQGDAEFCNEVEIISNLKHRNLVPLRGCCVVDDGESFEERGQRYLVYDYMLNGNLEHHLFLSSPSVVGNHNEKRSLTWPQRKSIILDVANGLAYLHYGVKPSIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGNIDEALDASLVKDGDWPSSNPKSIMERFLLVGILCSHVMVALRPTISEALKMLEGDVEVPEIPDRPMPLGHPSFYNDSNNTFSISPALSGPKLHSGDMLR	651

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi03g1937	651	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	394	612	-	-
	Mibi03g1937	651	FunFam	probable receptor-like protein kinase At1g11050	275	393	-	-
	Mibi03g1937	651	ProSitePatterns	Protein kinases ATP-binding region signature.	316	338	IPR017441	GO:0005524
	Mibi03g1937	651	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	447	459	IPR008271	GO:0004672\|GO:0006468
	Mibi03g1937	651	Pfam	SPARK	27	193	IPR043891	-
	Mibi03g1937	651	CDD	STKc_IRAK	316	606	-	-
	Mibi03g1937	651	SMART	serkin_6	310	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g1937	651	ProSiteProfiles	Protein kinase domain profile.	310	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g1937	651	Pfam	Protein kinase domain	312	530	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi03g1937	651	SUPERFAMILY	Protein kinase-like (PK-like)	286	605	IPR011009	-
	Mibi03g1937	651	PANTHER	OS01G0750732 PROTEIN	62	612	-	-
	Mibi03g1937	651	Gene3D	Transferase(Phosphotransferase) domain 1	394	612	-	-
	Mibi03g1937	651	Gene3D	Phosphorylase Kinase; domain 1	281	393	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi03g1937	Mibi-ChrMibi03	54207369	54209324	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi03g1937	28	651	Receptor kinase-like Gene Family	AT1G11050	66.186	0.0	810

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RKF3	Mibi03g1937		Pkinase	7.4e-42	CL0016