Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1885 ATGGTTTCGTCTCTGCAAGTGGTGATTGTGCTTGACCGCAGATCTATTCAATCTGGATTTGCAGGTAAAGAACACCTTCTGATCCTGCCATGGAGATTTCAGCAGCTTAAGTTACATTTACATCTAGGTCTTGAGAGCCATATCATCGTTCGTGATGTAAGGGATAGTTTTGGGAGCTTATCTAGGAGGAGTTTTGATGTCAGGCTGTCTGGCCACCACCGAGGGAAGTCTCAGGGATCTTTTCAAGATTTGCATGATCAGCCTCTAGTTATTCAAAGTAGCCGCTGGGCAAGTCTACCCCCAGAATTGCTATATGATGTTATTAGAAGGCTAGAGGAGAGTGAGAGCACATGGCCGGCTCGAAAGCATGTTGTTGCATGTGCCGCAGTTTGCCGGTCTTGGAGGAACATGTGCAAGGAAATTGTGAAGAGCCCAGAATTCTGTGGAAAGCTTACTTTCCCTGTGTCCCTGAAGCAGCCTGGACCAAGAGATGGAATGGTTCAGTGTTTTATCAAAAGAGATAAATCAAATTTGACATACCACCTTTTCCTCTGTCTCAGCCCTGCTTTGTTGGTTGAAAATGGAAAATTTCTCCTATCTGCCAAGAGGACGAGAAGAACAACTTATACAGAGTATGTTATTTCCATGGATGCTGACAACATCTCCAGATCAAGTAGCACTTACATTGGGAAGCTGAGATCAAATTTCCTTGGAACAAAATTCATAATATATGATACACAGCCACCATATACTTCTGCCCAAATACCCCCTCCGGGAACCGGTAGGACGAGTCGAAGGTTTTATTCCAAAAAGGTCTCGCCAAAGGTCCCGTCTGGTACTTACAACATAGCTCAGGTGACATATGAATTAAATGTACTGGGGACACGAGGCCCAAGGAGGATGCACTGTATTATGCATTCAATTCCAGTCTCTGCGCTCGACTCGGATGGCACCGTTCCTGGCCAACCGGAGCTGCTTCCTTGCACCCTTGAGGATTCATTCCGCAGCATTTCCTTCTCCAAGTCTCTAGACCACTCTATTGAGTTCAGTAGTGCACGATTTTCTGACATTGGGGGTGCATCCTGCAGCAATGATGATGAGGATAACAAGTTGAGACCATTGGTTCTGAAAAACAAACCCCCAAGGTGGCATGAACAGCTTCAATGCTGGTGCCTCAACTTCCGCGGACGGGTGACAGTCGCTTCTGTTAAAAACTTCCAGCTGATCGCCTCCACCCAACCAGCTGCTGGTGCGCCCACGCCTTCCCAGCCGGCCCCACCAGATCACGATAAGATAATTCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACCATGGACTATCGATACCCTTTATCCGCTTTCCAGGCTTTCGCTATATGCTTGAGTAGCTTCGACACCAAACTGGCTTGTGAATAG 1419 0.4679 MVSSLQVVIVLDRRSIQSGFAGKEHLLILPWRFQQLKLHLHLGLESHIIVRDVRDSFGSLSRRSFDVRLSGHHRGKSQGSFQDLHDQPLVIQSSRWASLPPELLYDVIRRLEESESTWPARKHVVACAAVCRSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGMVQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTSAQIPPPGTGRTSRRFYSKKVSPKVPSGTYNIAQVTYELNVLGTRGPRRMHCIMHSIPVSALDSDGTVPGQPELLPCTLEDSFRSISFSKSLDHSIEFSSARFSDIGGASCSNDDEDNKLRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPAAGAPTPSQPAPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1885 472 Gene3D - 91 144 - -
Mibi03g1885 472 FunFam Tubby-like F-box protein 91 144 - -
Mibi03g1885 472 ProSitePatterns Tub family signature 1. 394 407 IPR018066 -
Mibi03g1885 472 PANTHER TUBBY-RELATED 73 470 - -
Mibi03g1885 472 ProSitePatterns Tub family signature 2. 457 472 IPR018066 -
Mibi03g1885 472 Gene3D Tubby Protein; Chain A 155 466 IPR025659 -
Mibi03g1885 472 FunFam Tubby-like F-box protein 153 472 - -
Mibi03g1885 472 PRINTS Tubby superfamily signature 376 393 IPR000007 -
Mibi03g1885 472 PRINTS Tubby superfamily signature 212 228 IPR000007 -
Mibi03g1885 472 PRINTS Tubby superfamily signature 228 252 IPR000007 -
Mibi03g1885 472 PRINTS Tubby superfamily signature 429 448 IPR000007 -
Mibi03g1885 472 PRINTS Tubby superfamily signature 394 410 IPR000007 -
Mibi03g1885 472 PRINTS Tubby superfamily signature 280 307 IPR000007 -
Mibi03g1885 472 PRINTS Tubby superfamily signature 450 472 IPR000007 -
Mibi03g1885 472 SUPERFAMILY F-box domain 91 140 IPR036047 GO:0005515
Mibi03g1885 472 Pfam F-box domain 96 143 IPR001810 GO:0005515
Mibi03g1885 472 SUPERFAMILY Tubby C-terminal domain-like 145 472 IPR025659 -
Mibi03g1885 472 Pfam Tub family 157 467 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1885 Mibi-ChrMibi03 53292816 53297054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1885 49 472 TUB Transcription Factor Family AT1G76900 69.717 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mibi03g1885 Tub 5.5e-117 CL0395