Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1723 ATGTCACTTGGATTTTGTGTTAATTTATTAGAAATTGGGAGGATGACGAGAAGGAAGATAGATATAAAAAAGATAGATAACATAGCAGCGAGACAGGTGACATTCTCAAAGAGAAGAAAAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACTCTTTGTGATGCTGAGATTGGCCTAATTGTATTTTCTTTCTCCGGAAAGCTCTATGACTATGCTAGCTCAAGTATGCAGCAGATAACTGAAAGACATGGTAACCATTTAGACAGGCACATATCAGATCAACATTGTATTGATTTTCCGATTGGAAGCGAAAGCTACAAGAAGCTAAGCCATGAAATTGCAATAAAGACCCATGAACTGAGGAAGTTAAAAGGGGAAGAGTTGCAAGATTCCACAATTCAAGAATTACAAAGACTAGAGGAACTGCTTGAAACGGGTTTGATGCGTGTTTCCAAGGCAAAGGATAAAGCAATCGTAAATGAGACCTTCGAACTCAAGAGAAAGGGAAAGCAACTGAAGGAAGAGAACAGGAGATTAAAACAGGTAACTCATGAACAAGGGCAATCATTTGGCTCAATGGTTTTGTCCAGTTCATCTCATAGTAATCCTCAAAACTTTAAAGATTTTGATACCTCTCTCAAGTTGGGGTTTTCTTGA 657 0.382 MSLGFCVNLLEIGRMTRRKIDIKKIDNIAARQVTFSKRRKGLFKKAKELATLCDAEIGLIVFSFSGKLYDYASSSMQQITERHGNHLDRHISDQHCIDFPIGSESYKKLSHEIAIKTHELRKLKGEELQDSTIQELQRLEELLETGLMRVSKAKDKAIVNETFELKRKGKQLKEENRRLKQVTHEQGQSFGSMVLSSSSHSNPQNFKDFDTSLKLGFS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1723 218 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Mibi03g1723 218 Coils Coil 106 126 - -
Mibi03g1723 218 ProSitePatterns MADS-box domain signature. 17 71 IPR002100 GO:0003677|GO:0046983
Mibi03g1723 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 186 - -
Mibi03g1723 218 MobiDBLite consensus disorder prediction 183 211 - -
Mibi03g1723 218 SUPERFAMILY SRF-like 16 93 IPR036879 GO:0003677|GO:0046983
Mibi03g1723 218 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Mibi03g1723 218 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Mibi03g1723 218 Pfam K-box region 104 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi03g1723 218 Coils Coil 165 185 - -
Mibi03g1723 218 ProSiteProfiles K-box domain profile. 99 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi03g1723 218 Gene3D - 27 95 IPR036879 GO:0003677|GO:0046983
Mibi03g1723 218 Coils Coil 136 156 - -
Mibi03g1723 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Mibi03g1723 218 MobiDBLite consensus disorder prediction 179 218 - -
Mibi03g1723 218 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Mibi03g1723 218 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Mibi03g1723 218 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1723 Mibi-ChrMibi03 49957242 49963878 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1723 15 217 MADS-box Gene Family AT2G22540 43.038 4.54e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi03g1723 K-box 3.1e-14 No_clan