Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1719 ATGACGAGAAAGAAGATAGAGATAAAGAAGATCGATAATATAACAGCGAGGCAAGTAACATTCTCAAAGAGAAGAAAAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACTCTTTGTGATGCTGAGATTGGTCTCATTGTCTTTTCTTCCACCGGAAAGCTCTATGACTATGCTAGCTCAAGGTTCCTCTTCCTTCTCTTTTATTGTATATATAGCCCTTCATCATCATCATCATCATCATCATCATCATCATCATCATAGAAAAAATGGATATGGTGGTCTTGGGTTGCTTCTAAACGCATAATTTTTAGTCAGAGTTGTGACTTCACCATGACTTCACTATGGCAAGGCCACGGTGAAGGTGCCTCATCTTTTGGGCTTTCTGTTTTTGTTTCTTCGTCGCCTCTTCGCTGGGCCGTGTCTGAGGCGAAGCTCATTTTCACTTTGCTGGGGCGAGGCTGA 462 0.4199 MTRKKIEIKKIDNITARQVTFSKRRKGLFKKAKELATLCDAEIGLIVFSSTGKLYDYASSRFLFLLFYCIYSPSSSSSSSSSSSSSXKKWIWWSWVASKRIIFSQSCDFTMTSLWQGHGEGASSFGLSVFVSSSPLRWAVSEAKLIFTLLGRG 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1719 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi03g1719 153 CDD MADS_MEF2_like 3 62 IPR033896 GO:0000977|GO:0045944
Mibi03g1719 153 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Mibi03g1719 153 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Mibi03g1719 153 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Mibi03g1719 153 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi03g1719 153 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi03g1719 153 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi03g1719 153 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi03g1719 153 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi03g1719 153 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1719 Mibi-ChrMibi03 49759632 49762393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1719 1 66 MADS-box Gene Family AT4G24540 68.182 1.27e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi03g1719 SRF-TF 4.3e-25 No_clan