Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1717 ATGGTGTTGTGTGGGGCCTAGCTCCTGGAAATGACAAGACAGAAGATAGAAATAAAGAAGATAGATAACATAACTGCGAGGCAAGTGACGTTTTCGAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTCAAGAACTCTCTACTCTCTGCGATGCTGAAATTGCTCTCATAGTCTTTTCTTCTACTGGCAAACTTTATGAATATGCTAGCTCCAGCATGCAGCAGATTATTGAAAGGCGTGGTCCGTTCTCAGACAATGAAAGATTAGATCATTCTTCTATAGAGTATGACAGAGACACCCTAAGCATGCTCAGCAAGGAAGAAGCCAATAAGATTCAGGAATTGAGGCAGTTGAATGGAGAAGATATAGAAGGATTGAACACAAATGAATTACAGAAACTGGAAGAGCAAGTAGATAAAGGTTTGAGACGTATTGTCAAAGCAAAGGATGAAATAATTTTTAAAGAAATTGATGATCTCAAGAGAAAGAGAACCCAATTGATGGAAGAGAATCGGAGATTGAAACAGGTGAGGAGTGTTGCACAAGAACAAGGTCAGTCATCTGAGTCAGCTAATATTGGCAGCATAGTTGATCCTCCACTTGACGATGATAGTTCAGATACTTCCCTCAGATTGGGGTGA 639 0.4022 MVLCGAXLLEMTRQKIEIKKIDNITARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSSTGKLYEYASSSMQQIIERRGPFSDNERLDHSSIEYDRDTLSMLSKEEANKIQELRQLNGEDIEGLNTNELQKLEEQVDKGLRRIVKAKDEIIFKEIDDLKRKRTQLMEENRRLKQVRSVAQEQGQSSESANIGSIVDPPLDDDSSDTSLRLG 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1717 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Mibi03g1717 212 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi03g1717 212 ProSiteProfiles K-box domain profile. 93 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi03g1717 212 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Mibi03g1717 212 Gene3D - 23 90 IPR036879 GO:0003677|GO:0046983
Mibi03g1717 212 Coils Coil 130 150 - -
Mibi03g1717 212 MobiDBLite consensus disorder prediction 173 212 - -
Mibi03g1717 212 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mibi03g1717 212 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Mibi03g1717 212 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Mibi03g1717 212 Coils Coil 156 183 - -
Mibi03g1717 212 ProSitePatterns MADS-box domain signature. 13 67 IPR002100 GO:0003677|GO:0046983
Mibi03g1717 212 Coils Coil 100 120 - -
Mibi03g1717 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 183 - -
Mibi03g1717 212 CDD MADS_MEF2_like 13 85 IPR033896 GO:0000977|GO:0045944
Mibi03g1717 212 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Mibi03g1717 212 MobiDBLite consensus disorder prediction 177 193 - -
Mibi03g1717 212 SUPERFAMILY SRF-like 12 90 IPR036879 GO:0003677|GO:0046983
Mibi03g1717 212 FunFam Transcription factor, MADS-box 23 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1717 Mibi-ChrMibi03 49698961 49707996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1717 11 212 MADS-box Gene Family AT2G22540 47.660 5.77e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi03g1717 K-box 3.2e-16 No_clan