Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1710 ATGACGAGAAGGAAGATAGCAATAAAGAAGATAGAGAACACAGCAGCGAGGCAGGTGGCTTTCTCAAAGAGAAGAAAAGGTCTCTTCAAGAAGGCTATGGAGCTCTCTACTCTCTGTGATGCTGAGATTGCTCTCTTTGTTTTCTCAGCTTCTGGCAAACTCTTTGATTATGCCAGCACAAGACAGGTAATTGAAAGAAGAAGCCTATACTCATCAGATGTGAACCTTGTCAAGTCACAACAGCCATCTGAAGAGCTACATGTTGAAGGTGAATATTTTAAGCTAAACAAGGAACTAAAAGAGAAGACTCGTGAACTGAGACATCTCAATGGAGAAGAATTACAAGGTTTGTCTAAAAAGGATCTACGGAAACTAGAAGATTTACTTAGCACAAGCTTGAATCGCATTTCAAAAGCAAAGGTTTGTCACTGA 432 0.4005 MTRRKIAIKKIENTAARQVAFSKRRKGLFKKAMELSTLCDAEIALFVFSASGKLFDYASTRQVIERRSLYSSDVNLVKSQQPSEELHVEGEYFKLNKELKEKTRELRHLNGEELQGLSKKDLRKLEDLLSTSLNRISKAKVCH 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1710 143 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Mibi03g1710 143 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 138 - -
Mibi03g1710 143 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi03g1710 143 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi03g1710 143 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi03g1710 143 Coils Coil 92 112 - -
Mibi03g1710 143 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi03g1710 143 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi03g1710 143 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Mibi03g1710 143 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi03g1710 143 Pfam K-box region 83 140 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi03g1710 143 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1710 Mibi-ChrMibi03 49419694 49422690 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1710 1 140 MADS-box Gene Family AT4G24540 50.350 1.34e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi03g1710 K-box 7.2e-09 No_clan