Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1706 ATGGCCATTAAAATGACGAGAAGGAAAATAGCAATAAAGAATATAGAGAACATAGCAGCGAGACAAGTAGCTTCCTCAAAGAGAATAATAGGTCTCTTCAAGAAGGCTATGGAGATCTCTTTGATTATGACAGTACAAGGTAGAAGGCATCTAAATGGAGAAGAACTTCAAGGATTGACCATAAAAGATCTAAAGAAGCTAGAAGATCTACTTAATACATGCTTGCATCCTGTTTCAAAAGCCAAGGATGAATCTTTTGAGCAGGAGATCAGTATTCTTAAGAAAGAGGAAGTCAAATTCTTGGAAGAAAACAAGAGATTAGAACAGGTACAATATAATAGATAG 345 0.3536 MAIKMTRRKIAIKNIENIAARQVASSKRIIGLFKKAMEISLIMTVQGRRHLNGEELQGLTIKDLKKLEDLLNTCLHPVSKAKDESFEQEISILKKEEVKFLEENKRLEQVQYNR 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1706 114 SMART madsneu2 5 55 IPR002100 GO:0003677|GO:0046983
Mibi03g1706 114 Pfam K-box region 46 109 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi03g1706 114 SUPERFAMILY SRF-like 5 45 IPR036879 GO:0003677|GO:0046983
Mibi03g1706 114 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Mibi03g1706 114 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Mibi03g1706 114 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 42 IPR002100 GO:0003677|GO:0046983
Mibi03g1706 114 ProSiteProfiles MADS-box domain profile. 5 42 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1706 Mibi-ChrMibi03 49320400 49326031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1706 5 42 MADS-box Gene Family AT2G22540 57.895 1.36e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi03g1706 K-box 7.9e-12 No_clan