Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1704 ATGGACAATACAACTGAAAATCCATCGAAAGAAACTGTGCATGAATATGAAGTCACAGAAGATCAAACTTTTGAAGAGTTAGGATTAGATGCACGCCTAATTCGTGCCTTACTCAAAAAGGGTGTCGAGAAACCAACTCCAATTCAACAGGCAGCCATTCCACTCATATTGGAAGGTAAGGATGTGGTTGCTCGGGCAAAGACAGGTTCTGGCAAGACATTTGCATACCTAGTTCCATTGCTTCAAAAATTGTTCACTAATAATGTTCAAAGAAAGAAGCTATCACCCAATGCATTCATTCTTGTGCCAACTCGAGAACTATGTCAACAGGTGTATGCAGAGGTTTCATCTCTCATAGAATTATGCAGAGTTCAATTGAGAGCTGTGCAATTGACAAGCAACATGAAGGCTTCTGATTTGGGGACAGCAATGACTGGACCACCAGATGTTTTGATTTCCACACCTGCCTGTATTGCTAAATGCTTGTCCACTGGCATACTTAAAACGACATCCTTGAACGGTTCCCTTGAAACTCTTGTTCTTGATGAGGCAGATCTTCTATTGTCATACGGCTACGAAAATGATATAAAAGCCTTTTCAGCTCATGTACCCAGAAGTTGCCAGTGCCTTCTTATGTCTGCGACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCCTTTATTTTGAAGTTGTCTGAACTAGAAAATCAGAAGGATGAGATTATCCCTAAAAATGTTCAACAATTTTGGATCTCATGCCCTGCCAGTGATAAGTTGCTTTACATCCTTGCCTTGTTGAAGTTAGAGTTGGTCCAAAAGAAAGTTCTAATATTTACCAATAGCATAGATATGAGTTTCAGGTTGAAACTGTTCTTGGAAAAGTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCTCAGAATTCCCGGCTCCATATTCTTGAGGAATTCAATGCTGGCCTCTTTGATTATCTTATTGCAACTGATGACAGCCACACAAAGAAGGATGAAGCAGCTAAAGAAAATAATGGTGAGTTGCAGCGGTCCAAAAAACATGTGAAGAAAAAATTAGATTCTGAATTTGGAGTTGTGAGGGGAATCGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCAAGGTGTTGCAGGATATGTCCATCGAATAGGACGCACTGGAAGAGCATACAATTCTGGTTCTTCTGTATCTTTGGTTTCTACCGATGAGATGGAAACTTTGGATGAAATAAGATCTTTTATTGGGGATGATGAAAACAATGGTTCAAGCACAATTGCTGAATTTCCATTGCTTACCAAGAATGCTGTTGAATCTTTACGGTATCGGGCTGAGGATGCTGCACGGAGTGTAACAAAAATTGCGGTTCGTGAATCACGAGCCCAGGATTTGAGGAACGAAATTCTAAACTCTGAAAAGTTGAAGGCACACTTTGAATCCAATCCAAGGGACTTAGATCTGTTGAAGCATGACAAAGTTTTGAGCAAAACTGCCCCTCCTGCACACTTACGTGATGTGCCGGAGTATTTAGTCGACAAAACAACCAAGGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAATAGTCGTTCACGAGGACGCAAAAGGAAAAAGCTCAGAAAAGGTGGAGATCCTCTCAAGGCTATTTCTGCCAAGGTGTCAAAAAGACCACACAAAGGGGATGGCCATAAACGGAGGAAGAAAAATGAAGTTTGA 1767 0.4069 MDNTTENPSKETVHEYEVTEDQTFEELGLDARLIRALLKKGVEKPTPIQQAAIPLILEGKDVVARAKTGSGKTFAYLVPLLQKLFTNNVQRKKLSPNAFILVPTRELCQQVYAEVSSLIELCRVQLRAVQLTSNMKASDLGTAMTGPPDVLISTPACIAKCLSTGILKTTSLNGSLETLVLDEADLLLSYGYENDIKAFSAHVPRSCQCLLMSATSSADVDKLKKLILHNPFILKLSELENQKDEIIPKNVQQFWISCPASDKLLYILALLKLELVQKKVLIFTNSIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSHTKKDEAAKENNGELQRSKKHVKKKLDSEFGVVRGIDFKNVYTVINFEMPQGVAGYVHRIGRTGRAYNSGSSVSLVSTDEMETLDEIRSFIGDDENNGSSTIAEFPLLTKNAVESLRYRAEDAARSVTKIAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKTAPPAHLRDVPEYLVDKTTKEAREMVKLARDAMGNNSRSRGRKRKKLRKGGDPLKAISAKVSKRPHKGDGHKRRKKNEV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1704 588 Pfam Helicase conserved C-terminal domain 262 404 IPR001650 -
Mibi03g1704 588 MobiDBLite consensus disorder prediction 538 588 - -
Mibi03g1704 588 CDD SF2_C_DEAD 251 413 - -
Mibi03g1704 588 SMART helicmild6 291 404 IPR001650 -
Mibi03g1704 588 CDD DEADc_DDX56 29 236 - -
Mibi03g1704 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Mibi03g1704 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Mibi03g1704 588 SMART ultradead3 41 254 IPR014001 -
Mibi03g1704 588 Coils Coil 474 494 - -
Mibi03g1704 588 Gene3D - 237 442 IPR027417 -
Mibi03g1704 588 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
Mibi03g1704 588 Gene3D - 1 236 IPR027417 -
Mibi03g1704 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 234 IPR027417 -
Mibi03g1704 588 PANTHER RNA HELICASE 9 526 - -
Mibi03g1704 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 429 IPR027417 -
Mibi03g1704 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 450 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1704 Mibi-ChrMibi03 49258084 49264097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1704 23 444 Eukaryotic Initiation Factors Gene Family AT3G19760 25.592 3.55e-36 138