Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1691 ATGCTGTTGCCGGTTGTCATGGCTTGCGATGAAGAACTTCAAACCTATTTCTCGAGCAATTTCTGGCGATTGATTATTGGGGAAATGGGTACTATGAATAATACACAGCCACTTCAACTGCTTCAGGTTCCCATGCAAGTGGATGGTGTGGAAGATGGATTTAATGGTCAATGTGTCAATGATCGGATAGAAGAAGAAGGTCGAATGAGTTCTGGGTTATCGGGTACAACAAATGGTTGTGGTTTTAAATCTCGAACTAGTGAACTCTCCATTTCTTTTGAAGGCGAGGTTTATGTTTTCCCAGCGATTACGCCAGAAAAGGTACAGGCTGTCTTGTTATTGTTGGGAGGGTGTGAGATGCCCAGCCCCTGTAGTGCCCCCAGCACTGAGCTTTTTCTGCAACAGAACTACCAGGACATAAGGGGAGTTAATGATACTTCCCGGGGTTCGAAAGTTTCACGGAGATTTGCATCCCTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGATAAAAAAATTCGGTACAGCTGCCGTAAAGAAGTTGCACAGAGGATGCATCGTAAGAATGGACAGTTTGCATCGTCAAAGGAATGTGACAGTTCTGCTGCCGAAAACTGGGACTCTTGCAATGGTGCTGCTTGTTCAGAATCTAATGAACGTAAATGTCAGCATTGTGGAATAAGTGAAAAGTCCACTCCAGCAATGCGGCGAGGACCAGCTGGTCCAAGATCTCTCTGCAATGCTTGTGGACTGATGTGGGCAAATAAGGGGACTCTGAGGGATCTCAGCAAAACAGGAAAGGTCACTGCCATGGAACAAAATGAACTGGATGCTTCAGCTGAGAGGAAGCCTTCCACAACCGAACCAGATAATTCCTGCCCTGGGCAGAATGAGGAAGGAAGCCCCAAGGAGGCAAAGCCTGAGCTGTTGCAATCTGGACAGTCACCCAAGAGGGCGAATGAGCAGTATACACTTGAAACTGCTGAAGCAGTTACTGACAATTTATCCATCCAAGTGGAGAACCTTGATGTTAATCTGCATGAGCAGGATTCTCTTGAAGATATTGCTGATGCATCCGGAACAGATTTTGAGATTCCTACAGGTTTCGATGAGCAGATTGACATTGATGATTCCAACTTGAAGACCTACTGGTTATAA 1164 0.4519 MLLPVVMACDEELQTYFSSNFWRLIIGEMGTMNNTQPLQLLQVPMQVDGVEDGFNGQCVNDRIEEEGRMSSGLSGTTNGCGFKSRTSELSISFEGEVYVFPAITPEKVQAVLLLLGGCEMPSPCSAPSTELFLQQNYQDIRGVNDTSRGSKVSRRFASLVRFREKRKERCFDKKIRYSCRKEVAQRMHRKNGQFASSKECDSSAAENWDSCNGAACSESNERKCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKTGKVTAMEQNELDASAERKPSTTEPDNSCPGQNEEGSPKEAKPELLQSGQSPKRANEQYTLETAEAVTDNLSIQVENLDVNLHEQDSLEDIADASGTDFEIPTGFDEQIDIDDSNLKTYWL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1691 387 PANTHER GATA TRANSCRIPTION FACTOR 28 69 366 IPR045280 GO:0006355
Mibi03g1691 387 CDD ZnF_GATA 223 266 IPR000679 GO:0006355|GO:0043565
Mibi03g1691 387 Gene3D - 215 277 IPR013088 GO:0006355|GO:0008270
Mibi03g1691 387 ProSiteProfiles GATA-type zinc finger domain profile. 218 274 IPR000679 GO:0006355|GO:0043565
Mibi03g1691 387 SMART GATA_3 218 271 IPR000679 GO:0006355|GO:0043565
Mibi03g1691 387 Pfam GATA zinc finger 224 260 IPR000679 GO:0006355|GO:0043565
Mibi03g1691 387 Pfam tify domain 85 116 IPR010399 -
Mibi03g1691 387 Pfam CCT motif 155 197 IPR010402 GO:0005515
Mibi03g1691 387 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Mibi03g1691 387 SMART tify_2 82 117 IPR010399 -
Mibi03g1691 387 MobiDBLite consensus disorder prediction 277 321 - -
Mibi03g1691 387 ProSitePatterns GATA-type zinc finger domain. 224 251 IPR000679 GO:0006355|GO:0043565
Mibi03g1691 387 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Mibi03g1691 387 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 220 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1691 Mibi-ChrMibi03 48642179 48650060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1691 88 272 Tify Gene Family AT1G51600 55.208 2.66e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi03g1691 CCT 3.7e-14 CL0281