Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1540 ATGAGAAAACCCAAATCAAGGGACTTTCACAAGCAGCGACGACTTGCAGAGGAAGATGAGATTGGACTTTTGGACTCATGGATTCAATCTCAGAAACCGGACTCTGGATCCAATCCCATGTCATTTCCCCCTTTATCCTCCAAAGACCCTGTAGGTCGGATTGATGGCACTACATTTTCACGATATGTGGGTGTCACACGGTTTGACCAGTTGCCAATTTCCAAGAAAACCAAGGATGGTTTGTCAGAAGCTAAATTTGTTAAGATGACTGATATACAGAGGGCCAGTTTGCCCCATGCGCTTTGTGGGAGAGATATTTTGGGTGCATCAAAGACCGGGTCAGGAAAAACCTTGGCTTTCATTATTCCGGTCCTGGAAAAGTTATACACAGAGAGGTGGGGGCCTGAAGATGGGGTAGGCAGCATAATCATATCTCCTACAAGAGAATTAGCTGGTCAACTGTTTGATGTTTTGAAAAGTGTAGGTAAGCACCATAATTTCAGTGCTGGCCTGCTGATTGGGGGTCGCAAGGAAGTTAATTTGGAAAAAGAGCATGTAAATGACCTAAACATTTTGATCTGCACGCCCGGTCGCCTTCTACAACACATGGATGAAACTCCAAACTTTGATTGTTCACAGATTCAGATGTTGGTTCTAGACGAGGCAGATCGGATTCTTGACACTGGATTTAAGAAAGAATTAAATGCGATAATATCGCAGCTTCCAAAGCGTAGACAAACCCTACTCTTCTCAGCAACTCAAACGAAGTCTGTTGAAGTTCTTGCAAGACTGAGTTTAAAGGATCCAGAGTATCTGAGTGTCCATCAAGAGTCTGTGACTGCCACTCCTACTCTCTTGAGACAGCTTGTGATGATTGTTCCTCTGGACCAAAAGTTAGATATGTTGTGGAGTTTCATTAAGTCCCATCTTAACTCCAAAATGCTTGTCTTTCTCTCCAGCTGTAAACAGGTAAAATTTGTTTTTGAAGCATTTAAGAAACTTCGGCCTGGCATACCCTTGAAATGCCTTCATGGGAGGATGAAGCAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTACTCTTCTCAACTGATGTGGCTGCAAGAGGGCTTGATTTTAACAAGGCTGTTGACTGGGTTGTTCAGGTCGATTGTCCTGAAAATGTAGCATCTTACATACATAGAGTTGGGAGAACTGCTCGGTACAAGTGTGGGGGCAGATCAGTTTTATTTTTGATGCCTTCAGAGATGAAAATGCTTGAAAAGTTAGAAGCAGCTAAAGTTCCAGTACATCTTAATAAGCCTAGGAAGGAACGACTGCAACCTGTATCTGGTTTGTTAGCAGCGTTACTGGTCAAGTACCCAGATCTCCAGCAATGGGCAAAAAGGGCCTTCATAACCTATTTGAGATCCATTAATATCCAAAAGGATAAAGAAATCTTTGATCTTATGAAATTGCCAATTGATGAATACTCGGCATCGTTAGGCTTGCCAATCACCCCAAAAACTCGATTTCTTAGCCAAAAAAATAAATCTAAAGCTGTCTCAACAAAACCCATTTTAGCTGAACCAGAAGAATCCCCCCGAGGAATTGCATTAGAGATTCCAAGAGAGAATCTGGACGTTAATGGTCCTGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAAAAGGTCTTCTTTTGCCAGACAATTCCTCTGATGAAAGGGAAGGGATATCATCTGAAATTGTAGATGTCATACCACCAACCCGTGTCTCAAAGAAAAAGAAGCTCAAGATCAACATCCATAGACCAATGGGGACTAGGGTTGTATTTGATGACGAAGGTAATGCTCTGCCTCCACTAGCAAGAATTGCTGATACACAAACTGGGAAGGAAATATTGCTGCTTGATCCAGAACAAAAAGCCGAATACTATAGAAAGATGCGTGAGGAGTTGAAAAAGGTTGACAAGGAAGACAAGCTTGTGCAACAACAGCGTCGAAGAGAGAAGAGAATCAAGAAAAAAATGAATTTGAAGGAAATAAGTGCTGAAGATGATGATGACGACTACAATTCTGGGTCAGAAGATGAAGTTGATGATAGAAGGCATAAAAAGAGTAAGATATATTTTGATAGTGACAGTGATGATGAAACTAAAGGAACTGAAGTCACTGGCGGGAAAGAGGGTATTATTTCTAGGCCCGTTACTTTGGAGGAGCAAGAAGCTTTGGCTCTGAAGTTGTTAAATTCCATGCACTCATAG 2256 0.4193 MRKPKSRDFHKQRRLAEEDEIGLLDSWIQSQKPDSGSNPMSFPPLSSKDPVGRIDGTTFSRYVGVTRFDQLPISKKTKDGLSEAKFVKMTDIQRASLPHALCGRDILGASKTGSGKTLAFIIPVLEKLYTERWGPEDGVGSIIISPTRELAGQLFDVLKSVGKHHNFSAGLLIGGRKEVNLEKEHVNDLNILICTPGRLLQHMDETPNFDCSQIQMLVLDEADRILDTGFKKELNAIISQLPKRRQTLLFSATQTKSVEVLARLSLKDPEYLSVHQESVTATPTLLRQLVMIVPLDQKLDMLWSFIKSHLNSKMLVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKCGGRSVLFLMPSEMKMLEKLEAAKVPVHLNKPRKERLQPVSGLLAALLVKYPDLQQWAKRAFITYLRSINIQKDKEIFDLMKLPIDEYSASLGLPITPKTRFLSQKNKSKAVSTKPILAEPEESPRGIALEIPRENLDVNGPEEEEEEEEEEKGLLLPDNSSDEREGISSEIVDVIPPTRVSKKKKLKINIHRPMGTRVVFDDEGNALPPLARIADTQTGKEILLLDPEQKAEYYRKMREELKKVDKEDKLVQQQRRREKRIKKKMNLKEISAEDDDDDYNSGSEDEVDDRRHKKSKIYFDSDSDDETKGTEVTGGKEGIISRPVTLEEQEALALKLLNSMHS 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1540 751 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Mibi03g1540 751 CDD DEADc_DDX10 77 275 - -
Mibi03g1540 751 Pfam DEAD/DEAH box helicase 90 259 IPR011545 GO:0003676|GO:0005524
Mibi03g1540 751 PANTHER RNA HELICASE 65 556 - -
Mibi03g1540 751 SMART ultradead3 85 289 IPR014001 -
Mibi03g1540 751 MobiDBLite consensus disorder prediction 563 577 - -
Mibi03g1540 751 MobiDBLite consensus disorder prediction 653 731 - -
Mibi03g1540 751 MobiDBLite consensus disorder prediction 29 53 - -
Mibi03g1540 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Mibi03g1540 751 SMART DUF4217_3 447 510 IPR025313 -
Mibi03g1540 751 MobiDBLite consensus disorder prediction 521 577 - -
Mibi03g1540 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 428 IPR027417 -
Mibi03g1540 751 Gene3D - 57 278 IPR027417 -
Mibi03g1540 751 SMART helicmild6 325 408 IPR001650 -
Mibi03g1540 751 Coils Coil 643 663 - -
Mibi03g1540 751 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Mibi03g1540 751 Gene3D - 284 524 IPR027417 -
Mibi03g1540 751 MobiDBLite consensus disorder prediction 693 721 - -
Mibi03g1540 751 MobiDBLite consensus disorder prediction 29 44 - -
Mibi03g1540 751 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Mibi03g1540 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Mibi03g1540 751 CDD SF2_C_DEAD 286 417 - -
Mibi03g1540 751 MobiDBLite consensus disorder prediction 548 562 - -
Mibi03g1540 751 Pfam Domain of unknown function (DUF4217) 452 507 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1540 Mibi-ChrMibi03 41136506 41145218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1540 65 429 Eukaryotic Initiation Factors Gene Family AT3G19760 28.610 3.02e-39 148