Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1406 ATGGATCAGCTAACAATATTGTTCATCCTTTTATCAACATTTCACCTATATATAGCAGGAGTAGCTACAACATCATTCACAATAGTTAACAACTGCAACTACACAGTATGGCCAGCCATTGTTTCACATGGTAGTGCCTTTGATCTTTCTACCACTGGTTTTGAACTTCAAAATGGAGAGTCTAGGACAATCTCTGCACCAACCTCATGGAGCGGAAGCTTCTGGGGCAGAACACTCTGCACAACGGACTCCATTACCGGAAGGTTTAGCTGTATCACCGGAGATTGTGACTCCGGGAAGCCGGAATGCGAAGGCAAGGGCACCAACCAGCCTGCAACAATGGTAGAAATCAGTTTAGGCAAGGCTGGAGAGCTAGATTCATATTATGTGAGCTTAGTAAATGGATCCAATGTGCCTATGTTGGTTTTTCCACAGGGCGAAAACTGCTTAAGCACAGGTTGTACAGGGGACTTAAACAATATGTGCCCTCCAGAGATTGTGGGAAGCAATGGTGGAAAAGTGGTGGCATGTCTAAATGCATGCAAGGAATTAAATCCCCCACAGTACTGTTCTGAGCCAAACCGTTACTCACAACTATTTGATAGTGCTTGCCCATATGCTCAATTTTTTGATGACAACAACAATAACAATGGAAGAAAAGCATTTACATGCCCTGCTGCACCAGTTTATAGCATCAGCTTTTGCAGTCCACCTCCTGACCCAGACAAGAGACATCTGATATTGATCATTGTCATTACTGTAATCATAGGAGCTATCATTATTAATGGCACTTGTGCTTACTTTTTCAGGAAATGGATAGCAAAACATTCAGCAAGAATATGGAGGACCATGCTATTAAAAAGGGGCGGAGCGTCTCTTGAGAAAAAAAGTGATGACAACATCAATGGAGAATTTTCACAAGTTAAATTCCCCCAGGAGTTATTTGTGTATGACTTTAAGAAGGTTGCAATTGCCACGAACAACTTTCACTTGTCTAATAAACTTGGACAAGGCGGTTTTGGTCCTGTATATAAGGGAACATTACCAAATGGTCAGGTCATAGCAATTAAGAGACTATCCAGAGCATCTGGACAAGGACAAGAAGAATTTATGAATGAGATGGTTGTCATTTCAAAGCTTCAACACCGTAATCTTGTAAGACTTCTAGGTTGTTGTGTTAAAGGAGAAGAAAAGATCTTGATCTATGAATACATGACAAATAAAAGTTTGGATGCATTTATTTTTGATCCTTCAAATCGTAAACTACTTGATTGGGGAAAGCGATTTAATATAATTGAGGGAATAGCTCGGGGAGTACTTTATCTTCATAGAGATTCTAGACTAAGAATTATACATAGAGACCTAAAGGCAAGTAATGTATTGTTAGATGAGAACCTGATTCCAAAAATATCAGATTTTGGTATGGCAAGAATTTTTAAAGAGAGTGAAGATCAGGCTAACACAGAAAAAGTAGTTGGAACCTATGGTTATATGTCTCCAGAATATGCAATGGAAGGATGCTTTTCAGAGAAATCAGATGTGTTTAGCTTTGGAGTCTTGCTACTAGAGATCATTAGTGGAAGAAAAAACTCTAGCTTTTATCACAATGAGCATTCTTTGAGCCTTTTAGGACTTGCCTGGAAATTATGGAATGAAGAGAACCTTACATCGTTTATTGATCATGAAATATCCAATCCAATCCTAGAGAAGGATATATTGAGGTGCATACACATAGGGCTTCTATGTGTGCAAGACCTTGCAAGTGAGAGGCCAAATATGAGCATTGTAATTTCTATGTTGAATAGTGACATTGTTAGTCTACTTCCTCCAAGGCAGCCTGCGTTTATCCAGTGGCAAAGTAAAGTGAATAATGTGCCTATAGTAGAAAATGAAGCGGTATTTTCCAACAATGGACTTAGTGTTAGTGAGATACGTGGCCGATAG 1944 0.394 MDQLTILFILLSTFHLYIAGVATTSFTIVNNCNYTVWPAIVSHGSAFDLSTTGFELQNGESRTISAPTSWSGSFWGRTLCTTDSITGRFSCITGDCDSGKPECEGKGTNQPATMVEISLGKAGELDSYYVSLVNGSNVPMLVFPQGENCLSTGCTGDLNNMCPPEIVGSNGGKVVACLNACKELNPPQYCSEPNRYSQLFDSACPYAQFFDDNNNNNGRKAFTCPAAPVYSISFCSPPPDPDKRHLILIIVITVIIGAIIINGTCAYFFRKWIAKHSARIWRTMLLKRGGASLEKKSDDNINGEFSQVKFPQELFVYDFKKVAIATNNFHLSNKLGQGGFGPVYKGTLPNGQVIAIKRLSRASGQGQEEFMNEMVVISKLQHRNLVRLLGCCVKGEEKILIYEYMTNKSLDAFIFDPSNRKLLDWGKRFNIIEGIARGVLYLHRDSRLRIIHRDLKASNVLLDENLIPKISDFGMARIFKESEDQANTEKVVGTYGYMSPEYAMEGCFSEKSDVFSFGVLLLEIISGRKNSSFYHNEHSLSLLGLAWKLWNEENLTSFIDHEISNPILEKDILRCIHIGLLCVQDLASERPNMSIVISMLNSDIVSLLPPRQPAFIQWQSKVNNVPIVENEAVFSNNGLSVSEIRGR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1406 647 SUPERFAMILY Protein kinase-like (PK-like) 312 629 IPR011009 -
Mibi03g1406 647 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Mibi03g1406 647 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 294 404 - -
Mibi03g1406 647 Pfam Thaumatin family 30 235 IPR001938 -
Mibi03g1406 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Mibi03g1406 647 Gene3D Phosphorylase Kinase; domain 1 290 404 - -
Mibi03g1406 647 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 177 620 - -
Mibi03g1406 647 SMART tha2 26 236 IPR001938 -
Mibi03g1406 647 Gene3D Transferase(Phosphotransferase) domain 1 405 606 - -
Mibi03g1406 647 ProSiteProfiles Thaumatin family profile. 23 235 IPR001938 -
Mibi03g1406 647 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 405 608 - -
Mibi03g1406 647 PRINTS Pathogenesis-related protein signature 226 235 IPR001938 -
Mibi03g1406 647 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Mibi03g1406 647 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Mibi03g1406 647 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Mibi03g1406 647 SUPERFAMILY Osmotin, thaumatin-like protein 25 236 IPR037176 -
Mibi03g1406 647 SMART serkin_6 329 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g1406 647 Pfam Protein tyrosine and serine/threonine kinase 330 598 IPR001245 GO:0004672|GO:0006468
Mibi03g1406 647 CDD STKc_IRAK 335 601 - -
Mibi03g1406 647 ProSiteProfiles Protein kinase domain profile. 329 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g1406 647 Gene3D Thaumatin 24 236 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1406 Mibi-ChrMibi03 35190877 35193402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1406 252 626 Receptor kinase-like Gene Family AT4G05200 50.532 2.84e-122 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mibi03g1406 PK_Tyr_Ser-Thr 7.5e-50 CL0016