Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1388 ATGCATATTCTGATAAAACCGACAGATACTTGTGGACTTGAAGGTGAAGGTGCTCTTGCTTTTATTGAATTATTGAGTTTACGTTTGGACTGGTGCTGTTTAAGTTACTTCCTCGAATTTCTGACGATGGAAGGAGTTGCTTCAACAAAGTTCACAGTGATTAACAAATGCAATTACACAGTATGGCCAGGCATTTCTGGAGGTATAGGCAATACTCCATCAACCACCGGTTTTGTTCTTAAAACAGGTGAGTCTAGGATCATCTCTGTACCAACTTCATGGGGTGGCCGCCTTTGGGGTCGAACTCAATGCACACAAGACTCCATGGGAGGAAACTTCTCTTGCACCACCGGTGACTGTGGCTCTGGGAGGTTGGAATGCCAAGGTAGGGAACGCACACCACCTGTGACATTAGTAGAATTTACTCAACCCCAAGCAGGGCTTGGTTATTATGATGTGAGCCTGCTAGAGGGATTCAATGTGCCTGTAGCGGTTGTTCCTCACGGTGGCTGTGGATCCTGCAAGAGCACTTATTGTCTGGCAGATATGATCAGCCTATGCCCTTCAGAGTTGAGGGTAACGAGCAAAGATGGAAAAGTGGTGGCTTGTAGGGGCCCTTGTGGCACAAATGAACAATCTTGTGGCACCAACCCTTTCGACAAGCCGCCATCCTATTCACAGCTATTCAAGAGCGTTTGCCAACGTGCCTATAGCTATCCGTATGATGATGCTCGGCTAAGCTTGTTCACATGTAAAAGTGCATATTATAATATCACCTTTTGTGAATCACCCTACACAAATATGGACGCATCCGGCTCCCCATCATGCCCAGAAACCATCACATTATCTAACTACATCAATGATCCAGATACAATAAGCTCCGAAAAGGAATTGTTCATATGGAATGCAACTAACCCCTATTGGCGTAGTGGTCCATTGAATGACCAAAAAATTACAACAGTCCTCAGCATGAATTCTGAGAATGATAATGGGGCCAAAGAGACGGTTGTTAGCTTATCAAATAGGTTTGACATCAAAGACATAGTTGTTTTGAATTCCCAAGGAAAGTTATTGCATAAACAATGGAATGATACCAAGAGGCAATGGCAAGAAACCAATCTTGTTCAAAATTCAGAATGTGATGTTTATGGTATATGTGGGGAATTTGGAATATGCAATTCAATGAGTACACCAATCTGCAGTTGTTTGAGTGGGTTTGAACCAAGAAATAGGGAGGAATGGGGTAGACAAAATTGGACAGGTGGCTGTGTCAGAAATTCAACTCTGCAATGTGAGAAAGTGAACAATGGGAGTAACAATGGAAAGGAAGATAAGTTTCTCACTCTGCAAAATATTAAGGCACCAGACTTTGGGGAACAATCATCTAATTCAGAAGACAAATGCAGGATCCTGTGCTTGGAGAACTGCACTTGTAAAGCATATTCATATGATTCAATTCTTGGCTGTATGACATGGAAAGAAAATCTTATTGACGTACAACAGTTCTCCAATGGAGGGATTGACCTACATATTCGTGCAGCCAATTCAGACCCTGATAAGAGACAGAGGACATTCGTAATGATCATTACTGCAGTGATGGGAACCATCATTATCAGCGTCAGTTGTGCATACTTCTTATGGAAATGGAAGGCAAAACATTTAGGAAAATGGAATATTAGACAGTTATTGTTAAAAAGACATAGTGCAAATGGAGAAAAAACAAGTGGCAATATTATTGGAAAATTGCCACGAGTTAAATTCCAGGAGTTATTGGTCTATGATTTTGAAAAGATTGCAATGGCTACAAACAACTTTCAATTGACCAATAAACTTGGGCAAGGTGGTTTTGGTCCAGTCTATAAGGGAACACTGCAAGATGGTCAGGATATTGCAGTTAAGAGATTATCAAGATCATCTGGACAAGGACAAGAGGAGTTTATGAATGAGATGGTTGTCATTTCCAGTCTTCAACATCGTAACCTTGTAAAACTTTTAGGTTGTTGCATTGAAGGAGACGAAAAGATGTTAATCTACGAATACATGCCAAATAAAAGTTTGGATGCATTTATTTTTGGTTGGTTTTTCTTATCCCTTATGCTCTAG 2103 0.4094 MHILIKPTDTCGLEGEGALAFIELLSLRLDWCCLSYFLEFLTMEGVASTKFTVINKCNYTVWPGISGGIGNTPSTTGFVLKTGESRIISVPTSWGGRLWGRTQCTQDSMGGNFSCTTGDCGSGRLECQGRERTPPVTLVEFTQPQAGLGYYDVSLLEGFNVPVAVVPHGGCGSCKSTYCLADMISLCPSELRVTSKDGKVVACRGPCGTNEQSCGTNPFDKPPSYSQLFKSVCQRAYSYPYDDARLSLFTCKSAYYNITFCESPYTNMDASGSPSCPETITLSNYINDPDTISSEKELFIWNATNPYWRSGPLNDQKITTVLSMNSENDNGAKETVVSLSNRFDIKDIVVLNSQGKLLHKQWNDTKRQWQETNLVQNSECDVYGICGEFGICNSMSTPICSCLSGFEPRNREEWGRQNWTGGCVRNSTLQCEKVNNGSNNGKEDKFLTLQNIKAPDFGEQSSNSEDKCRILCLENCTCKAYSYDSILGCMTWKENLIDVQQFSNGGIDLHIRAANSDPDKRQRTFVMIITAVMGTIIISVSCAYFLWKWKAKHLGKWNIRQLLLKRHSANGEKTSGNIIGKLPRVKFQELLVYDFEKIAMATNNFQLTNKLGQGGFGPVYKGTLQDGQDIAVKRLSRSSGQGQEEFMNEMVVISSLQHRNLVKLLGCCIEGDEKMLIYEYMPNKSLDAFIFGWFFLSLML 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1388 700 PRINTS Pathogenesis-related protein signature 50 62 IPR001938 -
Mibi03g1388 700 PRINTS Pathogenesis-related protein signature 97 108 IPR001938 -
Mibi03g1388 700 PRINTS Pathogenesis-related protein signature 149 165 IPR001938 -
Mibi03g1388 700 PRINTS Pathogenesis-related protein signature 76 85 IPR001938 -
Mibi03g1388 700 PRINTS Pathogenesis-related protein signature 252 261 IPR001938 -
Mibi03g1388 700 Pfam Thaumatin family 55 261 IPR001938 -
Mibi03g1388 700 SUPERFAMILY Osmotin, thaumatin-like protein 50 261 IPR037176 -
Mibi03g1388 700 ProSiteProfiles Thaumatin family profile. 48 261 IPR001938 -
Mibi03g1388 700 CDD TLP-PA 50 261 - -
Mibi03g1388 700 ProSiteProfiles Protein kinase domain profile. 605 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g1388 700 ProSitePatterns Thaumatin family signature. 111 127 IPR017949 -
Mibi03g1388 700 ProSiteProfiles PAN/Apple domain profile. 431 514 IPR003609 -
Mibi03g1388 700 SUPERFAMILY Protein kinase-like (PK-like) 585 694 IPR011009 -
Mibi03g1388 700 FunFam receptor-like serine/threonine-protein kinase SD1-8 580 680 - -
Mibi03g1388 700 Gene3D Thaumatin 49 261 IPR037176 -
Mibi03g1388 700 Pfam PAN-like domain 441 499 IPR003609 -
Mibi03g1388 700 Gene3D Phosphorylase Kinase; domain 1 572 680 - -
Mibi03g1388 700 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 290 693 - -
Mibi03g1388 700 SMART ntp_6 441 513 IPR003609 -
Mibi03g1388 700 SMART tha2 51 262 IPR001938 -
Mibi03g1388 700 Pfam Protein tyrosine and serine/threonine kinase 606 690 IPR001245 GO:0004672|GO:0006468
Mibi03g1388 700 FunFam THAUMATIN-LIKE PROTEIN 1 49 262 - -
Mibi03g1388 700 Pfam S-locus glycoprotein domain 308 409 IPR000858 GO:0048544
Mibi03g1388 700 CDD PAN_AP_plant 428 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1388 Mibi-ChrMibi03 34769223 34772753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1388 593 690 Receptor kinase-like Gene Family AT5G38280 49.495 1.74e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mibi03g1388 Thaumatin 2.5e-58 CL0293