Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi03g1335 | ATGGAAGCCTACGGTGGTGGTTACTTGGTGGATGAGAAAGCTGCTAGGGTTGAGGATGCTTTCCTTGAATTCCTCAAGAGCTTCCGTGTTGGCCAGCAGAGAGAGCCTTATTACGAAGCTGAGATTGAAACAATGAAAGCCAATGAATCGAACACGATGTTCATTGATTTCTCGCATGTCATTCTTTACAACGATCTTCTTCAGAAAGCCATCTCTGATGAATATTTGAGGTTTGAGCCTTATCTGAAGAATGCTTGTAAGAGGTTTGTTATGGAGTTGAAGCCGACCCTCATATCTGACGATAATCCTAACAAGGATGTAAATATTGCTTTCTTCAACATTCCAATAGTTAAGAGGTTAAGGGAACTCGCTACTGCTGAAATTGGAAAACTAGTGTCTGTGACTGGAGTGGTGACAAGGACAAGTGAGGTTCGACCTGAGCTTCTCCAGGGAACTTTCAAGTGCTTAGAATGTGGTGGAGTTGTCAAGAATGTTGAACAACAATTCAAGTATACCGAGCCCGCAGTCTGTCTAAATGCAACCTGTTTGAAGGCCCCAAGGTGGGCATTGCTCCGGCAAGAGAGCAAATTTACTGACTGGCAGAGAGTCAGAATGCAGGAGACATCTAAAGAGATACCTGCCGGTTCTCTTCCTAGGTCTTTAGATGTTATCCTACGTCATGAGATTGTGGAACAGGCCAGGGCTGGTGACACGGTGATTTTTACAGGAACCGTTGTTGTCATACCTGATATATTGGCATTGGCCTCTCCTGGAGAGAGAGCCGAATGCCGTCGAGAAGCTTCTCAACGCAAGACTTCAGTTGGAACTGAAGGTGTGCAGGGTCTTAGGGCATTGGGAGTCAGAGACCTCTCATATCGACTAGCTTTTATAGCCAACTCTGTTCAGATATGTGATGGGAGAAGAGAGACAGACATCAGGAATAGAAAGAAGGATGCGGATGATGAAGAGCAGCAATTTACAACACAAGAGCTTGATGAAGTTAAAAGAATGAGGAACACTCCAGATTTCTTTAACAAACTTGTTGACAGTATAGCACCAACTGTCTTTGGTCACCAAGATATAAAGCGAGCAATCCTTCTTATGCTCATGGGTGGAGTTCACAAATTTACTCATGAAGGCATCAATCTCAGAGGAGACATTAATGTTTGTATTGTTGGGGATCCTAGTTGTGCCAAGTCGCAGTTTCTCAAATATACTGCTGGTATAGTTCCAAGATCTGTGTATACATCTGGAAAATCATCCTCTGCTGCTGGCTTGACTGCAACAGTTGCCAAGGAGCCTGATACTGGGGAGTTTTGCATTGAGGCTGGTGCTTTGATGCTTGCTGATAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGATGTCAGAGATCAGGTTGCAATTCACGAGGCCATGGAGCAGCAGACAATTAGTATCACAAAGGCAGGCATACAAGCCACACTTAATGCACGTACTTCCATTCTTGCGGCTGCCAATCCTACTGGGGGACGCTATGACAAGTCTAAGCCACTCAAGTATAACGTCGCCCTTCCACCAGCTATTTTATCAAGGTTCGATCTAGTATATGTTATGATTGATGACCCAGATGATCAGACAGATTACCACATAGCCCATCATATTGTGAGAGTTCATCAAAAGCATGAAGATGCTCTTGCTCCATCTTTCAGTACTGCAGAACTGAAGCGATATATAGCTTATGCAAAAACTCTCAAACCAAAGCTCAATCCAGATGCCAGAAAACTATTAGTAGACTCTTATGTTGCCCTTCGGAGAGGAGATATGAACCCTGGCAGTAGGGTTGCATATCGCATGACTGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCTGAGGCCATTGCGCGGTGTCATTTGGAAACACAGGTGCAAACTCGTGATGTTCGTCTAGCTGTAAGATTGCTGAATACATCGATAATAAGTGTGGAGTCCAGTGAAATTGATCTGTCTGAATTTCAAGAAGAAAACCGCGATGACAGCACGGGGGGTGATGATGGACCTGGTACCAGAAACAGTACTGATGATCAAGGGGGAAGCACTACAGAACCAAAAGCTGATGGAACTAAAGGGGGTGCAGCAGATGGTTCTACCCCTCAACAAGGGAAGAAACTTATCATTAGCGATGAATATTTCCAGAGAGTTACCCAAGCCCTTGTTATGCGCCTTAGACAGCATGAAGAAACTGTCGCACAAGAAGGGAATGGTTTGGCTGGAATGAGGCAACGGGATTTGATCCAATGGTATGTGAGTCAGCAAAATGAGAAAAACAATTACAGTTCAATGGAGGAGGCAGCTGCTGAAGTTACCAAACTCAAAGCTATTATAGAGAGTTTGATTCGGAGGGAGGGCCACTTGATAGTGTTAGATGATGGTAGGCAAGCAGCATCAGAGGCCGCAGGTGCGGAGCATGTGGCATCAATATCCAGAAATGACCGAATCCTGGCTGTGGCTCCAAACTATGTTGTTGATTGA | 2514 | 0.4463 | MEAYGGGYLVDEKAARVEDAFLEFLKSFRVGQQREPYYEAEIETMKANESNTMFIDFSHVILYNDLLQKAISDEYLRFEPYLKNACKRFVMELKPTLISDDNPNKDVNIAFFNIPIVKRLRELATAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGGVVKNVEQQFKYTEPAVCLNATCLKAPRWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDILALASPGERAECRREASQRKTSVGTEGVQGLRALGVRDLSYRLAFIANSVQICDGRRETDIRNRKKDADDEEQQFTTQELDEVKRMRNTPDFFNKLVDSIAPTVFGHQDIKRAILLMLMGGVHKFTHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPDTGEFCIEAGALMLADNGICCIDEFDKMDVRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALAPSFSTAELKRYIAYAKTLKPKLNPDARKLLVDSYVALRRGDMNPGSRVAYRMTVRQLEALIRLSEAIARCHLETQVQTRDVRLAVRLLNTSIISVESSEIDLSEFQEENRDDSTGGDDGPGTRNSTDDQGGSTTEPKADGTKGGAADGSTPQQGKKLIISDEYFQRVTQALVMRLRQHEETVAQEGNGLAGMRQRDLIQWYVSQQNEKNNYSSMEEAAAEVTKLKAIIESLIRREGHLIVLDDGRQAASEAAGAEHVASISRNDRILAVAPNYVVD | 837 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi03g1335 | 837 | Gene3D | - | 714 | 837 | - | - | |
| Mibi03g1335 | 837 | Pfam | MCM AAA-lid domain | 568 | 653 | IPR041562 | - | |
| Mibi03g1335 | 837 | MobiDBLite | consensus disorder prediction | 664 | 678 | - | - | |
| Mibi03g1335 | 837 | Gene3D | - | 147 | 198 | - | - | |
| Mibi03g1335 | 837 | Pfam | MCM6 C-terminal winged-helix domain | 716 | 836 | IPR041024 | - | |
| Mibi03g1335 | 837 | CDD | MCM6 | 346 | 652 | - | - | |
| Mibi03g1335 | 837 | SMART | mcm | 116 | 654 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g1335 | 837 | ProSiteProfiles | MCM family domain profile. | 343 | 549 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g1335 | 837 | FunFam | DNA helicase | 328 | 658 | - | - | |
| Mibi03g1335 | 837 | SUPERFAMILY | Nucleic acid-binding proteins | 21 | 250 | IPR012340 | - | |
| Mibi03g1335 | 837 | Gene3D | - | 9 | 116 | - | - | |
| Mibi03g1335 | 837 | Gene3D | - | 321 | 658 | IPR027417 | - | |
| Mibi03g1335 | 837 | Pfam | MCM N-terminal domain | 19 | 113 | IPR027925 | - | |
| Mibi03g1335 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 167 | 184 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mibi03g1335 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 75 | 87 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mibi03g1335 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 278 | 299 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mibi03g1335 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 117 | 129 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mibi03g1335 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 220 | 231 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mibi03g1335 | 837 | MobiDBLite | consensus disorder prediction | 664 | 715 | - | - | |
| Mibi03g1335 | 837 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 12 | 776 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g1335 | 837 | ProSitePatterns | MCM family signature. | 452 | 460 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Mibi03g1335 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 384 | 399 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g1335 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 496 | 508 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g1335 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 444 | 458 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g1335 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 523 | 531 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g1335 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 472 | 485 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g1335 | 837 | MobiDBLite | consensus disorder prediction | 679 | 697 | - | - | |
| Mibi03g1335 | 837 | Pfam | MCM P-loop domain | 331 | 553 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mibi03g1335 | 837 | Pfam | MCM OB domain | 120 | 248 | IPR033762 | - | |
| Mibi03g1335 | 837 | Coils | Coil | 775 | 795 | - | - | |
| Mibi03g1335 | 837 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 353 | 653 | IPR027417 | - | |
| Mibi03g1335 | 837 | FunFam | DNA helicase | 147 | 198 | - | - | |
| Mibi03g1335 | 837 | Gene3D | - | 120 | 248 | IPR012340 | - | |
| Mibi03g1335 | 837 | FunFam | DNA helicase | 713 | 837 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi03g1335 | Mibi-ChrMibi03 | 32904900 | 32910347 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi03g1335 | 1 | 837 | Core DNA Replication Machinery Family | AT5G44635 | 72.171 | 0.0 | 1279 |