Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi03g1239 ATGCCCAGGTTTTGTACATCCAAAGGTTTTATACCCAAGGATATAGGCAATGTTGTTCAACTTGAAATCTTAGATTTGGGATCAAACAATTTGAGTGGATCTATTCCTTCCAACGTGTTCAACATTTCAACATTGACAATTCTACACCTTAGCGGTAATTCCCTCTCGGGCATTCTTCCGTCATATTTAGGAATTGGCCTTCCAAACCTAAAGAAGTTGTATTTGGATGAAAATAAATTAACCGGACAAATCCCAAATAACCTATCAAATGCTTCTAACCTCACTAGATTAGATTTGTCTTCGAATAAATTTAGTGGAGCTATACCCAATGTGATCGGAAATTTAACAAGCCTATTCTACTTAGCTTTGGAAGGAAATGAATTGACTGGCTTGATTCCAGATACATTTAGCAAATTACATAACCTTCAATTTTTAAGTCTTAGCAACAACAGATTGCAAGGGTCTATTACAAATGAACTTTGCCAACTCAAAAGTTTAAGTGAGTTGTATCTTGCCAACAATATGTTTTTAGGAATGGTTCCAGAATGCCTCGGGAATACAAATTTGCACAAGTTGGATTTTAGCTCTAATAAATTGATTTCTCATATACCCTCTTCTCTTTGGAGTCTCATAGATATCTTGGTTTTAGACATATCCTCCAATGCTCTAAGTGGAACAATTTCACCAGAGGTATCAAACTTGAGAGCCATTATACTATTGAACTTGTCAGGAAATCAAATTTCAGGAAGCATCCCTTCAACTATGGGTGGCTTGCAAACTTTGCAAACCCTATCTTTGGCACACAACAAATTACAAGGCCCCATTCCTGAATCACTTAAAGGCATGATAAGCATGGAGTCTATGGATCTTTCTCATAATTATTTGTCTGGTGTGATTCCAAAGTCCTTAGAGTCATTAATCTACCTAAACTACATTAATTTTTCATACAATTTATTGTATGGAGAAATTCCAAATGGCGGCCCATTTCAAAATTTTATTGCTGAATCTTTTATGATGAATAAAGATCTTTGTGGGAAATCCCAACTACGAGTCCAACCATGTAGTAAAGGAAACAAGCACATGTCAGATAAAGTGATGTTGATTATAAAATTCTCATTGCCTATCATGGTTGTCATTTTGGTTGTTTCAAGCATTGTCTTTCTAAAGTGGCGTAAGAGAGATGATGATAATAATTCAACCAAAACAAATTTAATCAATTTAGATACACCAACCAGGATATCATATTATGAGCTTCTACATGGAACAAATGGATTTGATGAGATTAATCTTCTTGGGTTTGGAAGTTTTGGATCAGTATACAAAGCAATTCTTCCAAATGAAGAGATAGTTGCTGTCAAAGTATTTAACTTAGACATGGAAGAAGCATTAAGAAGTTTTGATATTGAATGTGTTGCCATGTGCAAATTACGCCATCGAAATCTCATTAAGATCATTAGTAGTTGTTCAAATGATGATTTCAAATCTCTGATAATGGAATTCATGGAAAATGGGAGTCTTGAAAAATGGTTGTACTCTCATAACTATTATTTAGATGTCTTGCAAAGGTTGAGCATAATGATTGACGTGGCAGCGGCTTTGGAGTATCTTCATCATGGTTCTTCTACGTTAGTTGTACATTGTGATGTGAAACCAAGCAATGTTTTGTTGGATGAAAATATGGTAGCTCATCTTAGCGATTTTGGTATTGCTAAATTGCTTGGTGAAAGGCAACTGGAAACTTGTACCAAAACTTTGGCAACAATTGGCTATATGGCACCAGAGTTTGGATTGGATGGAGTTGTTTCTGCCAAAGGAGATGTGTATAGTTTTGGGATTTTGCTAATGGAAATGTTTACGATGAAGAAGCCAACAGATGAGATGTTTGTTCAAGGATTAAGTTTGAAAGATTGGGTGAGAAAATCGACACCACATTCCATCATGAATGTTATAGATGCCAATTTGCTGAACAAAGAAAATCAAAATACTGATAATATAATACCTTATATATCATCAATTTTTGAGTTAGCATTAAATTGTTGCATTGACTTTCCAAAGGAACGGCTTACTATGGTTGATGTTGTAGTATCGTTGAAAAAAATCAAGACTTCAATTATGGAAAATGTCAAACACACCACTAGTTGA 2142 0.3487 MPRFCTSKGFIPKDIGNVVQLEILDLGSNNLSGSIPSNVFNISTLTILHLSGNSLSGILPSYLGIGLPNLKKLYLDENKLTGQIPNNLSNASNLTRLDLSSNKFSGAIPNVIGNLTSLFYLALEGNELTGLIPDTFSKLHNLQFLSLSNNRLQGSITNELCQLKSLSELYLANNMFLGMVPECLGNTNLHKLDFSSNKLISHIPSSLWSLIDILVLDISSNALSGTISPEVSNLRAIILLNLSGNQISGSIPSTMGGLQTLQTLSLAHNKLQGPIPESLKGMISMESMDLSHNYLSGVIPKSLESLIYLNYINFSYNLLYGEIPNGGPFQNFIAESFMMNKDLCGKSQLRVQPCSKGNKHMSDKVMLIIKFSLPIMVVILVVSSIVFLKWRKRDDDNNSTKTNLINLDTPTRISYYELLHGTNGFDEINLLGFGSFGSVYKAILPNEEIVAVKVFNLDMEEALRSFDIECVAMCKLRHRNLIKIISSCSNDDFKSLIMEFMENGSLEKWLYSHNYYLDVLQRLSIMIDVAAALEYLHHGSSTLVVHCDVKPSNVLLDENMVAHLSDFGIAKLLGERQLETCTKTLATIGYMAPEFGLDGVVSAKGDVYSFGILLMEMFTMKKPTDEMFVQGLSLKDWVRKSTPHSIMNVIDANLLNKENQNTDNIIPYISSIFELALNCCIDFPKERLTMVDVVVSLKKIKTSIMENVKHTTS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi03g1239 713 SMART LRR_typ_2 67 91 IPR003591 -
Mibi03g1239 713 SMART LRR_typ_2 18 42 IPR003591 -
Mibi03g1239 713 SMART LRR_typ_2 234 258 IPR003591 -
Mibi03g1239 713 SMART LRR_typ_2 115 138 IPR003591 -
Mibi03g1239 713 SMART LRR_typ_2 139 163 IPR003591 -
Mibi03g1239 713 SMART LRR_typ_2 187 210 IPR003591 -
Mibi03g1239 713 SMART LRR_typ_2 282 305 IPR003591 -
Mibi03g1239 713 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 501 710 - -
Mibi03g1239 713 ProSiteProfiles Protein kinase domain profile. 425 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g1239 713 Gene3D Phosphorylase Kinase; domain 1 385 500 - -
Mibi03g1239 713 FunFam Serine-threonine protein kinase plant-type 405 500 - -
Mibi03g1239 713 Pfam Leucine rich repeat 260 319 IPR001611 GO:0005515
Mibi03g1239 713 Pfam Leucine rich repeat 68 128 IPR001611 GO:0005515
Mibi03g1239 713 PANTHER OS04G0122200 PROTEIN 9 118 - -
Mibi03g1239 713 ProSitePatterns Protein kinases ATP-binding region signature. 431 453 IPR017441 GO:0005524
Mibi03g1239 713 SMART serkin_6 425 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g1239 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672|GO:0006468
Mibi03g1239 713 PRINTS Leucine-rich repeat signature 94 107 - -
Mibi03g1239 713 PRINTS Leucine-rich repeat signature 139 152 - -
Mibi03g1239 713 ProSiteProfiles Leucine-rich repeat profile. 141 163 IPR001611 GO:0005515
Mibi03g1239 713 Pfam Protein kinase domain 426 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi03g1239 713 SUPERFAMILY RNI-like 10 325 - -
Mibi03g1239 713 SUPERFAMILY Protein kinase-like (PK-like) 399 697 IPR011009 -
Mibi03g1239 713 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 67 358 - -
Mibi03g1239 713 SMART LRR_sd22_2 258 281 - -
Mibi03g1239 713 SMART LRR_sd22_2 186 202 - -
Mibi03g1239 713 SMART LRR_sd22_2 18 44 - -
Mibi03g1239 713 SMART LRR_sd22_2 67 90 - -
Mibi03g1239 713 SMART LRR_sd22_2 91 117 - -
Mibi03g1239 713 SMART LRR_sd22_2 139 168 - -
Mibi03g1239 713 Gene3D Transferase(Phosphotransferase) domain 1 501 712 - -
Mibi03g1239 713 Gene3D Ribonuclease Inhibitor 66 363 IPR032675 -
Mibi03g1239 713 Gene3D Ribonuclease Inhibitor 4 65 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi03g1239 Mibi-ChrMibi03 29293021 29296067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi03g1239 8 711 Receptor kinase-like Gene Family AT3G47570 36.207 3.54e-143 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mibi03g1239 Pkinase 9.7e-45 CL0016