LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi03g1158	ATGGGGGGTTTGATCGATCTCAACACTACGGAGGACGATGAAACGACGCCGTCGTGTCTTTCTTCGGCGGCTTCTTCTTCGTCTTCTCAATCTGGTGTTGTAATTACTGATTTGTCCCCTTCTTCTGCAAATTCTGTGTGCTTGGAGCTATGGCATGCTTGTGCGGGTCCCTTGATCTCTTTGCCCAAGAAAGGAAGCGTTGTTGTGTATTTCCCACAGGGTCACTTGGAACAACAGCTTCATGATTTTGCGGTTGATGCCTCTAATATCAATTTACCATCTCGTGTTTTCTGTCGCGTTCTTGATGTTAAGCTCCATGCGGAGGAAGGGAGCGATGAAGTGTATTGCCAGGTCTCGTTGGTTCCTGAGAGTGAGCAAGTGGAACAAAAACTGCCAGAAGGAGTACTTGATGCTGATGGTGAAGAGGAGGAGGATGGTGATGCTGTGGTGAAGTCGACGACACCCCACATGTTCTGCAAGACTCTTACAGCTTCTGATACTAGCACTCATGGTGGATTTTCTGTGCCTCGGCGAGCTGCTGAAGATTGCTTTCCTCCCCTGGATTACAACCAACAGAGACCTTCACAGGAGCTTGTGGCTAAGGATCTGCATGGCCTGGAATGGAGGTTCCGACATATTTACAGAGGTCAACCAAGGAGGCATTTGCTCACAACTGGATGGAGCGCATTTGTAAACAAGAAGAAGCTTGTGTCTGGGGATGCTGTGTTGTTTCTCAGGGGCAATGATGGAGAACTGAGATTGGGAATTCGTAGGGCTTCTCAATTAAAAAGTATTGGTACTTATTCAGTGCCATCTGCTCATCAGTTGAACCATAGCACGCTCATGGACGTCATTAATGCTGTGTCCACAAAATGTGCCTTTAATGTGTATTATAATCCCAGGGTAAGCTCATCAGGATTCATAATACCCCTTCACAAATTCTTGAAGAGCCTTGATCATTCATATTTTGTTGGAATGAGGTTTAGGATGCGTGTTGAAACTGATGAAACTACAGAGTGGAGGTGCACTGGATTAATTGTTGGAATGAGTGATGTGGATCCTATTAAGTGGCCTGGATCAAAATGGAAATGCTTGGTGGTCAGGTGGGATGACATTGAAGCCTCTAGGCATAATAGGGTTTCCCCTTGGGAGATTGAGGCATCTAGTGCTGCTCCCACTTCCAATAATTTCATGGCAGCTAATTTTAAGAGGAACAGGGTTGGTTTGCCTTTAGAAAAGGCTGAATTACCAGTCCTGAATAGGATTGGAGGATCAGACTTTGGGGAATCATTGAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGCATTAATACCCCATATGTTGGTATCAATGCTCAGAGTCACCAATTATCTGAAAGTAGGTGCTATCCTGGGTCAAATAGTTCCAGAATCGTAGCAATAGGAAATAATGTCAGGGTCCCACAAGCGAGCTCTGACATTTCATGCCGTGGCATAGGCTTTAGTGAATCTTCACGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATACAGAACCTTGTCTGTTAATGAGGCTCATGGAAATGGTTGCTTTGGAATCTTTGATGGTTGTCAATTGCTGGGCTCCAGAAATCAATGGTCTACCCAGATGCTGGACAATTCTTCCCATATGCATCCATCTGGGCCGGTTTCATCTCCATCATCTGTTCTGATGTTCCAGCAAGCAGCCAATCAAGTTTCCAACTTTGATTATGGGAATAAAAGTAATCAAGAGATGGAGAGGAAAATGCACCACCGAGGTTTCTATGCTTCTGAAATGAAAGGTAGAAAATTACCACAATCCCCATCTTATGAGCCTGGTTCCTGTGGGCAAGTTCAGGAAGGAACAAATTCTTTTGGCACTTCAAATTTTCATAATCATCTGGTCACATCAAGTTCGGATGATTCTCGTTTGCCACTGACAGGTAGCCGAGAGTTGGTTTCCTCATGTAAAAGTAGCTGCAGACTCTTTGGTTTTTCATTGACCGAGGAAAATCCTATTGCCCATGAAGAAGCAGGCTCATCCACGATCACTTGTCAATTAAATTCCGGACCTTCCTTTATAAGGCAAGTTGGGGATGAACTTCAGCTAGGGCATTCATTCAGGAGCAAGGCAGCTGGAGGCAACTATACCAAAGGTTTACTGCGGTATTGA	2193	0.4492	MGGLIDLNTTEDDETTPSCLSSAASSSSSQSGVVITDLSPSSANSVCLELWHACAGPLISLPKKGSVVVYFPQGHLEQQLHDFAVDASNINLPSRVFCRVLDVKLHAEEGSDEVYCQVSLVPESEQVEQKLPEGVLDADGEEEEDGDAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGNDGELRLGIRRASQLKSIGTYSVPSAHQLNHSTLMDVINAVSTKCAFNVYYNPRVSSSGFIIPLHKFLKSLDHSYFVGMRFRMRVETDETTEWRCTGLIVGMSDVDPIKWPGSKWKCLVVRWDDIEASRHNRVSPWEIEASSAAPTSNNFMAANFKRNRVGLPLEKAELPVLNRIGGSDFGESLRFQKVLQGQEMLGINTPYVGINAQSHQLSESRCYPGSNSSRIVAIGNNVRVPQASSDISCRGIGFSESSRFQKVLQGQEILPSQPYRTLSVNEAHGNGCFGIFDGCQLLGSRNQWSTQMLDNSSHMHPSGPVSSPSSVLMFQQAANQVSNFDYGNKSNQEMERKMHHRGFYASEMKGRKLPQSPSYEPGSCGQVQEGTNSFGTSNFHNHLVTSSSDDSRLPLTGSRELVSSCKSSCRLFGFSLTEENPIAHEEAGSSTITCQLNSGPSFIRQVGDELQLGHSFRSKAAGGNYTKGLLRY	730

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi03g1158	730	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	44	683	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Mibi03g1158	730	MobiDBLite	consensus disorder prediction	9	26	-	-
	Mibi03g1158	730	Gene3D	-	322	394	-	-
	Mibi03g1158	730	FunFam	Auxin response factor	156	260	-	-
	Mibi03g1158	730	CDD	B3_DNA	156	258	IPR003340	GO:0003677
	Mibi03g1158	730	FunFam	Auxin response factor	321	392	-	-
	Mibi03g1158	730	Pfam	Auxin response factor	285	365	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Mibi03g1158	730	Gene3D	-	156	260	IPR015300	-
	Mibi03g1158	730	MobiDBLite	consensus disorder prediction	608	651	-	-
	Mibi03g1158	730	MobiDBLite	consensus disorder prediction	617	651	-	-
	Mibi03g1158	730	SMART	B3_2	158	260	IPR003340	GO:0003677
	Mibi03g1158	730	Pfam	B3 DNA binding domain	158	259	IPR003340	GO:0003677
	Mibi03g1158	730	SUPERFAMILY	DNA-binding pseudobarrel domain	151	264	IPR015300	-
	Mibi03g1158	730	ProSiteProfiles	B3 DNA-binding domain profile.	158	260	IPR003340	GO:0003677
	Mibi03g1158	730	MobiDBLite	consensus disorder prediction	1	26	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi03g1158	Mibi-ChrMibi03	26433012	26441379	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi03g1158	36	511	B3 DNA Binding Superfamily	AT5G60450	50.513	6.06e-148	448

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Mibi03g1158		B3	3.1e-22	CL0405