LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi03g1128	ATGGCAACTCAAAGTGATCATCAAGGAAAACCGAGCTTTGGTTTCGCTGTAATGGAGTCGTCGCCATCGAAGTTGAAGGATATTAACCAGAAAAGTAGCGCTCACCATCATCATCATGCATCTGCAGATTCATCAGAAGGGATTCTTGAGAATATATGGGCTAGGGTTGTCAACACAACGAAAAATAATTCATGGGAAGGGCTTCCAAATCTTGATGGAAAAGTTGAATCTAAGGAGATTCTACAAAGGCTTCCAAGTTTGGGAAGATGGATATCAATGGGAGCTGAAGCATGGGAAGAAATTTTATCTGATTTTCCACAAAACCTGCTTCAAGACACATGCAGTTATAGTAACAATCTGGAAATTTTCAGGAATATTGAGTCCAATTGTAAAAAGGTAGAAGAAGAAAAAGAAGGTGGCGGTATCGTTAGGGAAAAGAATAATAATAATAAGGATGGTGAAAGCAGAAGACATTACAGAGGAGTGAGAAGAAGGCCATGGGGAAAATATGCAGCAGAAATAAGGGACTCATCAAGGAATGGAGCTAGGGTTTGGCTTGGGACATTTGAGACAGCTGAAGAAGCAGCTTTAGCTTATGATAAAGCAGCTTTGAGAATTAGAGGTCACAAGGCTTACTTGAATTTCCCACTTGAAACTGTTGCAAAAGCTTTAGGGTTTGACCTCAAGGGAAGTCACAATACAAATAGTAATCCAAATAATCCTATTATTATTACTGCCTCTGCTTCTTCAACCTGTGATGACGACTATGCTGAAAATTGCAGCAATATTTCCAGGAAAAGAAGATTGAGGACTATTGAAGATCCTGAAGCTAAAAGGATGGCCAATTTGGGGAATGAAGTGGATGTTGTTGTGTTTCAGGACTTGGGGAATGATTATTTGGAGAGTTTGTTATCTTCTTTTTTGTGA	927	0.3927	MATQSDHQGKPSFGFAVMESSPSKLKDINQKSSAHHHHHASADSSEGILENIWARVVNTTKNNSWEGLPNLDGKVESKEILQRLPSLGRWISMGAEAWEEILSDFPQNLLQDTCSYSNNLEIFRNIESNCKKVEEEKEGGGIVREKNNNNKDGESRRHYRGVRRRPWGKYAAEIRDSSRNGARVWLGTFETAEEAALAYDKAALRIRGHKAYLNFPLETVAKALGFDLKGSHNTNSNPNNPIIITASASSTCDDDYAENCSNISRKRRLRTIEDPEAKRMANLGNEVDVVVFQDLGNDYLESLLSSFL	308

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi03g1128	308	PANTHER	DNA-BINDING DOMAIN	121	302	IPR044808	GO:0003700\|GO:0009873
	Mibi03g1128	308	MobiDBLite	consensus disorder prediction	24	44	-	-
	Mibi03g1128	308	FunFam	Ethylene-responsive transcription factor 2	157	218	-	-
	Mibi03g1128	308	Gene3D	AP2/ERF domain	157	218	IPR036955	GO:0003700\|GO:0006355
	Mibi03g1128	308	CDD	AP2	166	216	IPR001471	GO:0003700\|GO:0006355
	Mibi03g1128	308	Pfam	AP2 domain	158	209	IPR001471	GO:0003700\|GO:0006355
	Mibi03g1128	308	PRINTS	Ethylene responsive element binding protein signature	182	198	IPR001471	GO:0003700\|GO:0006355
	Mibi03g1128	308	PRINTS	Ethylene responsive element binding protein signature	159	170	IPR001471	GO:0003700\|GO:0006355
	Mibi03g1128	308	SMART	rav1_2	158	222	IPR001471	GO:0003700\|GO:0006355
	Mibi03g1128	308	ProSiteProfiles	AP2/ERF domain profile.	158	216	IPR001471	GO:0003700\|GO:0006355
	Mibi03g1128	308	SUPERFAMILY	DNA-binding domain	158	218	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi03g1128	Mibi-ChrMibi03	25391906	25392832	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi03g1128	48	307	AP2-EREBP Transcription Factor Family	AT4G18450	35.650	1.20e-42	147

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi03g1128		AP2	2.6e-15	CL0081